PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G067600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 572aa    MW: 63813.7 Da    PI: 4.6657
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G067600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.92.6e-1292025712374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cA+a+s+ +  +aq++++ l++++s +gdp +R+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P+++
  Brast01G067600.1.p 202 KQLLFDCATALSEYNIDEAQTIITDLRQMVSIQGDPSHRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSAMQILFEICPCYR 289
                         589*****************************************************************9...89999************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN aIlea +geer+HiiDfdi+qG Q+++L+q + + +++p +lRiTgv+++e++      l+ +g+rL+k+Ae +g++fef++ 
  Brast01G067600.1.p 290 FGFMAANYAILEACKGEERMHIIDFDINQGSQYITLMQFMKNDANKPRHLRITGVDDHETVqrTVGGLKVIGQRLEKLAEDCGISFEFRA- 379
                         *********************************************************9988778889***********************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         va ++ d+++ +L+++p+Eal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F++rf e  +yysalfdsl+
  Brast01G067600.1.p 380 VAANIGDVTPAMLDCRPEEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFVTRFREVYDYYSALFDSLD 470
                         799**************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF p p+++++   +++ll+ + ++ y+ ee++g l +gW 
  Brast01G067600.1.p 471 ATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMMMAGFAPCPFNSNVIGGIRSLLNSYCDR-YKFEEDHGGLHFGWG 560
                         *************************************************************************66.*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +++L++ SaW+
  Brast01G067600.1.p 561 EKTLIVSSAWQ 571
                         **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.311175552IPR005202Transcription factor GRAS
PfamPF035148.9E-127202571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSFVGRVDPS TTYADNIYVH KFGPPNSNFA ARRFGSDAQL FRYGPEPFNS EDYEHMGFTE  60
APSSAFQNSY YNQQASLTPY HVTANGRSPS ISDNMANSCS NAAKDSPVFS NVSQQNSQSI  120
SDNHSSGLEV EFDPEIRLKL QELEHALLDD GDDILFEISQ AGCINDEWAD PMKDVLLPNS  180
PKESESSISC AGSNNGEART PKQLLFDCAT ALSEYNIDEA QTIITDLRQM VSIQGDPSHR  240
IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCYRF GFMAANYAIL  300
EACKGEERMH IIDFDINQGS QYITLMQFMK NDANKPRHLR ITGVDDHETV QRTVGGLKVI  360
GQRLEKLAED CGISFEFRAV AANIGDVTPA MLDCRPEEAL VVNFAFQLHH LPDESVSIMN  420
ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FVTRFREVYD YYSALFDSLD ATLPRESPDR  480
MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMMMA GFAPCPFNSN VIGGIRSLLN  540
SYCDRYKFEE DHGGLHFGWG EKTLIVSSAW Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-6320857025377Protein SCARECROW
5b3h_D3e-6320857025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G067600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496460.0AK249646.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47j02, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564775.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLI1HU000.0I1HU00_BRADI; Uncharacterized protein
STRINGBRADI2G56910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]