PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G056400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 383aa    MW: 40501.1 Da    PI: 8.0906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G056400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11316361655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk Lq
  Brast01G056400.1.p 316 SIAERERRTRISKRLRKLQDLVPNM----DKQTNTSDMLDIAVDYIKVLQ 361
                         689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.903310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15313371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-12314365No hitNo description
Gene3DG3DSA:4.10.280.109.1E-15315371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-9316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNRLTPPAQH HGGRAMMHPP PQQQQHGLAR YGSAPGAFLA ALADSAVASQ PQAVSRFFSS  60
GGETSSGLAS CESSCRTDGA PPGGRLQRAY GGSGEITRHV PPPPPQAAAL APQPGLLRHS  120
SSPAGLLSRL MADNPHGNNG GMGIGGYSQH SQAGNVDAMA QHRRLSSQWS FSRQQQDMIM  180
PQISEMGMAL ASMPPDIGES IATGGNSSSD GAGGNAQSSS YGGGGLSRNF SMSSWDDTNS  240
IMFSSPARSS KKAKVMADLD HADDGMVTSF SNIDSQFGVS SSSLEIPGMD DYLQLQQDSV  300
ACRVRAKRGC ATHPRSIAER ERRTRISKRL RKLQDLVPNM DKQTNTSDML DIAVDYIKVL  360
QDQIEKLKQD QGNCSCLGNQ NC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G056400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564851.10.0transcription factor bHLH128
TrEMBLA0A0Q3GIV00.0A0A0Q3GIV0_BRADI; Uncharacterized protein
TrEMBLI1HUA30.0I1HUA3_BRADI; Uncharacterized protein
STRINGBRADI2G57800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-48bHLH family protein