PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g25760.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 786aa    MW: 87809.3 Da    PI: 6.553
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g25760.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.2e-07193216327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +f++ G C  Gd+C+F Hgp
  Bradi5g25760.2.p 193 MVPCYYFQK-GNCVKGDKCPFYHGP 216
                       789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.0E-6190216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986190217IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6191215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4195216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MRDLPAFYTS LFQGGITGVK KSVQGNKQLP GKDMCSRRTW ELEEEGNCRS RKTELRAALA  60
VLPGGARRIW NVTGSHADVA AGLRRREKAR SAASSCWAEK GRRRRDPAAR ANLATGAVIM  120
EEDGASAAEA AVPAATKPLT PEEEALRRNT DCVYFLASPL TCKKPIDGMF GAPSPGIPAV  180
SSHYAAYNLG KQMVPCYYFQ KGNCVKGDKC PFYHGPQSTG NNPPEQVAKV SSFPLEQPQT  240
QKNDLLGIKE SARTNNLIQR GGPIIDDRSK MAVDRPTANS AKTPADAIPA KLASSALKSL  300
PKSEKLQSSM PAAKRSFRTS SGEDHPECYH NNLIESDPVQ DWNEDYRPPA DDDLPQNSRE  360
ADELPGESSP GFDVLVDNDG DAAAYLHDEE DFGRDMYPVE DYEYAPADFE IPPHHERELF  420
NRMGEQGPVG QIYDGYERKR RRTSSERNMD RPSHSERRSR HRDIGHVEID GSDLRHRLRR  480
RKINGSSGTS PERSGEHRRR DERYRERAYD GHHTHRDRHR SPRGSTLSSR LQGRIKLPGR  540
SPDRVVTSSE KEQDRRPLRE RLSPVKHMDV QGVRHREAGQ HQERTLRRSS ELPSSARNAD  600
GQHLRRNVTE SLNFGRKANG RVESEASLDF EGPKPLSIIL QKKRQATCGN GSSAHNGKQD  660
KSAKVSHRQP ESIVETEKEG YDNIVSSEEY KSRSGDEYKE ESRIPAEGHG QSSSHGDKPE  720
TEDIIEVDPV VNQEADNYEQ GEGESDYDAA EGQEYKSEDE NAYQNDEDEF EDDDDFARKV  780
GVVFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
183104RRREKARSAASSCWAEKGRRRR
2437441RKRRR
3437442RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g25760.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580797.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2K2CJA20.0A0A2K2CJA2_BRADI; Uncharacterized protein
STRINGBRADI5G25760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]