PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g25700.1.p
Common NameBRADI_5g25700, LOC104581460
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 412aa    MW: 44260.5 Da    PI: 10.5306
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g25700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.2e-1880170275
          trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                       Wt +e+l+Li+a+r +++r   g                  +++++W++v ++++++g+ rs++qC++kw+nl ++ykk+++  ++ +s+s
  Bradi5g25700.1.p  80 WTLHETLVLITAKRLDDDRRAGGGvagssssspagpsalprSAEQRWKWVENYCWSQGCLRSQNQCNDKWDNLLRDYKKVRDFHNRLASNS 170
                       **************777777654344456677778888888*****************************************999875544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.55172153IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.6E-573155IPR009057Homeodomain-like
PfamPF138375.3E-1179164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSASPDPSPS SSTPAGHLRT HPYPHHHNLH LSTPPPPQPH PPAAPGPLAV TPPHQQALAP  60
YSAPPPSPAS TPRDYRKGNW TLHETLVLIT AKRLDDDRRA GGGVAGSSSS SPAGPSALPR  120
SAEQRWKWVE NYCWSQGCLR SQNQCNDKWD NLLRDYKKVR DFHNRLASNS TAPSGSGAAP  180
AAAAPLPTSY WAMERHERKE RNLPTNLAAE VYDALCDVLS RRAARRGGAP VAPSPPPPLA  240
LPAPPLHPPP KPLLSQQQQR IPPHHPPLLQ LPPPPVAVAP PPTTTSVSED EMTGSSSDSG  300
SSSGRAGGGG DEPEAKRQRR QRGRVSDRGR VGSSVVRGAT VLARTLVACE EKRERRHRER  360
LELEERRLRL EAERAEARRQ GFAGLISAVH SLSGAIHALV SDHARSGDSS R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315321KRQRRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g25700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8278371e-76HQ827837.1 Oryza officinalis isolate CC Shattering4 gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751247.10.0trihelix transcription factor ASR3
TrEMBLI1J3760.0I1J376_BRADI; Uncharacterized protein
STRINGBRADI5G25700.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.16e-36Trihelix family protein