PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g19950.1.p
Common NameBRADI_5g19950, LOC100830904
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 331aa    MW: 35776.2 Da    PI: 7.0129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g19950.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-1371122155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++ + + a+i+  A++++k+L+
  Bradi5g19950.1.p  71 QRMTHIAVERNRRRQMNEYLAVLRSLMPDS---YAHRGDQASIVGGAIDFVKELE 122
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.89E-1369126No hitNo description
SuperFamilySSF474596.02E-1869142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.47870121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-1571139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1071122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1076127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTLDAVCGAA TDALVYDTFN AAAAAHDAWT AGTSAAAMPG EEGDGEKVQG GRRKRRRRPR  60
SCRNREEAES QRMTHIAVER NRRRQMNEYL AVLRSLMPDS YAHRGDQASI VGGAIDFVKE  120
LEQQLQSLEA QKRALLSSQQ QRKPPIRDAI PTTPSTAVTA TAAATTSSGG TGAGEEPSSP  180
PAHEEDAGAP FARFFTYPQY VWRQRRPRED YRPTEAEPEE KRGGGTAAAD IEVSLVETHA  240
SVRVMAPRRP GQLLRMVAGM EALRLAVLHL NVTALDSLAL YSLSLKVEEG CGLATADDVA  300
AAVHHVICII HGEATSQQRM LTGRQPELLS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157RRKRRRR
25256RKRRR
35259RKRRRRPR
47182RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g19950.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575795e-79AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581588.10.0transcription factor bHLH96
TrEMBLI1J1590.0I1J159_BRADI; Uncharacterized protein
STRINGBRADI5G19950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-48bHLH family protein