PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g18717.2.p

Common Name

BRADI_5g18717

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HD-ZIP

Protein Properties

Length: 818aa MW: 87881.7 Da PI: 5.0806

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g18717.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	112	167	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+ ++++eq++eL++lF k+++p++ +r+eL+++l L+ +qVk+WFqNrR++ k Bradi5g18717.2.p 112 KRPYVRHSSEQIQELQALFDKCPHPDEMQRAELSRRLFLDPSQVKFWFQNRRTQTK 167 789999**********************************************9987 PP
2	START	137.1	1.9e-43	320	558	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S.. CS START 1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla.. 77 ela +a++elvk+a+ e+p+W+ s+ e +n++e+l +f++ + +++ea+r+sg+v+ ++++ lve l+d + +W++ + Bradi5g18717.2.p 320 ELAKSAMDELVKMAQMEDPLWTPSVslsdspakETLNYEEYLNTFSPCIGvkpagFQSEASRESGIVIsDDSVALVEALMDER-RWSNIFScm 411 57899***************99999***************99889**********998345679*****.999999999 PP ..EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX...EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEE CS START 78 ..kaetlevissg.......galqlmvaelqalsplvp...RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgil 153 k +t++ is+g + l + v ++++ + +v ++ +f+R+++qlg+g w++vdvS+d + + + +++lpSg+l Bradi5g18717.2.p 412 vaKSSTIAEISTGvagsrdgALLLVSVEQYAVSTLHVHilyQKATFLRFCKQLGEGAWAVVDVSIDGLVVDQGlaaasTTANMNCRRLPSGCL 504 99*************5444444455555554443346*******************985433332333447778999****** PP EEEECTCE.EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 154 iepksngh.skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++ ++ +kv wveh++++++++h l+rsl++sgla ga +w+atlqrqc++ Bradi5g18717.2.p 505 VQQDTRNGfCKVKWVEHAEYDESSVHPLYRSLLRSGLALGAGRWLATLQRQCKC 558 98877777******************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-18	99	167	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-20	102	168	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.973	109	169	IPR001356	Homeobox domain
SMART	SM00389	1.3E-16	111	173	IPR001356	Homeobox domain
CDD	cd00086	2.03E-16	112	167	No hit	No description
Pfam	PF00046	6.7E-17	112	167	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	144	167	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	38.35	311	561	IPR002913	START domain
SuperFamily	SSF55961	3.3E-18	314	558	No hit	No description
CDD	cd08875	4.74E-93	315	556	No hit	No description
SMART	SM00234	2.2E-25	320	558	IPR002913	START domain
Pfam	PF01852	2.6E-36	321	558	IPR002913	START domain
SuperFamily	SSF55961	6.78E-18	580	810	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MPREKAMSFL GFSDDDGGDG ALTGMELPFP GAGTGVFIPT PALSVATADA AGHGGDGGRV 60 VPVGCAGGGT VRSASEAENE RRSRTIDHLD VVSGGGFGRD DDAACGMPRK RKRPYVRHSS 120 EQIQELQALF DKCPHPDEMQ RAELSRRLFL DPSQVKFWFQ NRRTQTKAKL VRDENVQLRQ 180 ENDRLRAENL CIREAMRHPV CGNCGRPVVL GVLSLEEQHL RAQNARLTEE LSRVCAASSE 240 FLGKSISLPA PLQTHQPEPM PGSRVQPAAG GVGSVPSTTV ASSTITEFTG TASTSSGTAI 300 MTMSEEPLEI AGIDKSVLLE LAKSAMDELV KMAQMEDPLW TPSVSLSDSP AKETLNYEEY 360 LNTFSPCIGV KPAGFQSEAS RESGIVISDD SVALVEALMD ERRWSNIFSC MVAKSSTIAE 420 ISTGVAGSRD GALLLVSVEQ YAVSTLHVHI LYQKATFLRF CKQLGEGAWA VVDVSIDGLV 480 VDQGLAAAST TANMNCRRLP SGCLVQQDTR NGFCKVKWVE HAEYDESSVH PLYRSLLRSG 540 LALGAGRWLA TLQRQCKCWA TLQSCVAAWE QYSSDVLAAG TQSLLKLAQR MMESFFSGVS 600 ASSALEWSKL DGFTDNIGND VRIIERKSVD EPGVPPGVVL CAATSVWMLV TPERLFQFLC 660 DEGTRAEWDI LSTGGPMQEV TNIAKGQQDG NTVSLLRTNT TNTQQNGILI LQETCTDASG 720 SMVVYAPVDI PAMHLVMSGG DSASVPLLPS GFVILPDGPT IPGDGHKTCG SLLTFAFQIL 780 VKNSEPTAKL TVESIQTVNN LISCTINRIK TALHCDV*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MPREKAMSFL GFSDDDGGDG ALTGMELPFP GAGTGVFIPT PALSVATADA AGHGGDGGRV  60
VPVGCAGGGT VRSASEAENE RRSRTIDHLD VVSGGGFGRD DDAACGMPRK RKRPYVRHSS  120
EQIQELQALF DKCPHPDEMQ RAELSRRLFL DPSQVKFWFQ NRRTQTKAKL VRDENVQLRQ  180
ENDRLRAENL CIREAMRHPV CGNCGRPVVL GVLSLEEQHL RAQNARLTEE LSRVCAASSE  240
FLGKSISLPA PLQTHQPEPM PGSRVQPAAG GVGSVPSTTV ASSTITEFTG TASTSSGTAI  300
MTMSEEPLEI AGIDKSVLLE LAKSAMDELV KMAQMEDPLW TPSVSLSDSP AKETLNYEEY  360
LNTFSPCIGV KPAGFQSEAS RESGIVISDD SVALVEALMD ERRWSNIFSC MVAKSSTIAE  420
ISTGVAGSRD GALLLVSVEQ YAVSTLHVHI LYQKATFLRF CKQLGEGAWA VVDVSIDGLV  480
VDQGLAAAST TANMNCRRLP SGCLVQQDTR NGFCKVKWVE HAEYDESSVH PLYRSLLRSG  540
LALGAGRWLA TLQRQCKCWA TLQSCVAAWE QYSSDVLAAG TQSLLKLAQR MMESFFSGVS  600
ASSALEWSKL DGFTDNIGND VRIIERKSVD EPGVPPGVVL CAATSVWMLV TPERLFQFLC  660
DEGTRAEWDI LSTGGPMQEV TNIAKGQQDG NTVSLLRTNT TNTQQNGILI LQETCTDASG  720
SMVVYAPVDI PAMHLVMSGG DSASVPLLPS GFVILPDGPT IPGDGHKTCG SLLTFAFQIL  780
VKNSEPTAKL TVESIQTVNN LISCTINRIK TALHCDV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	113	PRKRKRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g18717.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581542.2	0.0	homeobox-leucine zipper protein ROC4
Swissprot	Q7Y0V9	0.0	ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBL	A0A0Q3KV81	0.0	A0A0Q3KV81_BRADI; Uncharacterized protein
STRING	BRADI5G18717.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Bradi5g18717.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wei J, et al. GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7. Plant Sci., 2016. 252: p. 133-143 [PMID:27717449] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]