PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g18044.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 596aa MW: 66163 Da PI: 6.3356 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.3 | 2e-29 | 22 | 153 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 ppGfrF Ptdeelv +yL ++++g+++ +++i e ++y+++P +L + +++e++wyf ++r++ky++g+r+ r t+ +g+Wka+ ++e Bradi5g18044.2.p 22 PPGFRFMPTDEELVEYYLLPRLQGRPHVPNDCIIEDNVYRCHPDELIdGHKDKGETSWYFLTPRSRKYTKGDRPDRCTDdhRGRWKASTGKTE 114 8*************************888899**************8455566788********************887669****9888899 PP NAM 92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 + ++ + +++ tL ++ g + +kt+W+m e + Bradi5g18044.2.p 115 IEKEtvgNVRVKFFESTLGYHVGPVDTETKTKWLMRELS 153 9888555555677789*******99999********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-35 | 20 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.303 | 21 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-16 | 22 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MAEGEEQKKS GEEGEEKKST HPPGFRFMPT DEELVEYYLL PRLQGRPHVP NDCIIEDNVY 60 RCHPDELIDG HKDKGETSWY FLTPRSRKYT KGDRPDRCTD DHRGRWKAST GKTEIEKETV 120 GNVRVKFFES TLGYHVGPVD TETKTKWLMR ELSIKDFQIK LDQNSMKLDE YVMCRIYVTP 180 RHKSNNDDEA GPSGTSTCQE QEASPAPSQP EPVESGAQAQ GGAAPNKLSA RQKGKRPVEA 240 MRRGPMATPK RGSPLDLLLG PPAPLHAGGG MQPPFWPGRP MVNRARTSMM AFSGRVGPRA 300 HTSMPRPPMA FMGQVRPSVH ASMPRPPMAF SGQVPRFRAA HGAAAAGNFG QAMMMQRHMN 360 PAGQAFRLPP PPTVTRSPEE RMQPETEEMS EQRVLQQLEN EWMMHAGGMV QAQQQPATGN 420 VAAYPTQPMA FTEQHEWMCG TMEQQPGNVT YATQQPHEPM AFFAQQEQEQ QLYFDGDDNR 480 HQYLGQPMVL QSEFEFTPCN YQHVEVGQQF QSGCAVVVPD SAAATTPLAA STAEVQRAEE 540 PEPETGARMR GQTSEGNATT MRGSALLSWQ QRTGVLPDGT SASADDDGTR HDSQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-19 | 12 | 177 | 6 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g18044.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311838.1 | 0.0 | uncharacterized protein LOC100827131 | ||||
TrEMBL | A0A2K2CHY2 | 0.0 | A0A2K2CHY2_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14361 | 20 | 24 | Representative plant | OGRP14638 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77450.1 | 9e-26 | NAC domain containing protein 32 |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g18044.2.p |