PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi5g17810.1.p | ||||||||
Common Name | BRADI_5g17810, LOC100837532 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 315aa MW: 32788.7 Da PI: 8.4221 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.7e-05 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H Bradi5g17810.1.p 5 TCKLCSRRFASPRALAGHMRSH 26 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.681 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0078 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.78E-7 | 5 | 26 | No hit | No description |
Pfam | PF13912 | 1.2E-4 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.78E-7 | 169 | 193 | No hit | No description |
Pfam | PF13912 | 5.9E-10 | 173 | 198 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 39 | 174 | 194 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.9E-7 | 240 | 261 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 240 | 260 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAKNTCKLCS RRFASPRALA GHMRSHSVAA AARSQISSAS SASTSFAAGD DAAAAEAKKA 60 INQGYVLREK PKRRVRLAES DFSDRESEAE YPTPDAKRAA HAGSADTEPL SSLSDAATPE 120 EDVAMSLVML SRDSWPATEA PWASSYLADS DSGSDGGGEA PRHHAAAAQK RTRFQCPACK 180 KVFRSYQALG GHRASRVRGG RGGCCAPPLK PLPPRPAAHL QPLPECDGGE GGSKPQPHPH 240 ECPYCFRMFA SGKALGGHKR SQLCSGAAAA ASDADPAVAI KSLGLIDLNL PAPFDDVVEL 300 SAVSDPFLSS RPGS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 75 | KPKRRVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi5g17810.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003580289.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | I1J0D9 | 0.0 | I1J0D9_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G17810.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 9e-27 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi5g17810.1.p |
Entrez Gene | 100837532 |