PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g13450.1.p
Common NameBRADI_5g13450, LOC100839065
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 357aa    MW: 40354.3 Da    PI: 5.1916
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g13450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.86.5e-30562001128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                       lp+G++F+P+d el+  +L++kv   +      ++  +   +i+e+ +i++++P++Lp  +k + ++ yfF++ +++y  g+rk+r+      
  Bradi5g13450.1.p  56 LPAGVKFDPSDLELL-THLEAKVGLGNsashilID--DfipTIEEIeGICYTHPENLP-GIKIDGTNSYFFHTISNAYDVGQRKRRKvvssdh 144
                       799************.89****9888756665533..14335999988**********.6777899********************7577777 PP

               NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                           +  +W++tgk++++ + +g ++g kk+Lv+y g+++kg    kt+W+mh+y+l
  Bradi5g13450.1.p 145 tvrDEPIRWHKTGKSRSISE-NGVVKGWKKILVLYIGSKKKGAdiyKTNWTMHQYHL 200
                       65433567**********99.99************99999887777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-3348219IPR003441NAC domain
PROSITE profilePS5100527.80756219IPR003441NAC domain
PfamPF023651.3E-1257200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEESLIITWK TIAKIIRKST NMSPFEIEKL VAEAWRECPN CKCRIDNDVS SQWPGLPAGV  60
KFDPSDLELL THLEAKVGLG NSASHILIDD FIPTIEEIEG ICYTHPENLP GIKIDGTNSY  120
FFHTISNAYD VGQRKRRKVV SSDHTVRDEP IRWHKTGKSR SISENGVVKG WKKILVLYIG  180
SKKKGADIYK TNWTMHQYHL GVEEDEKHGE LVVSKIFWQL RSNKTRKSQI YVVDEEYDSV  240
AGEIDPTTPM TNPPQPRRLN SSPSKTEQNE EEDEEYGLTS QAINDAATLP GLAEHPLSNG  300
THTCPKNAPL PLDMDALHGF SHFDKDLFDL PDNPFGSQDS LSWLDLDDKH IEEKEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g13450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581357.20.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLI1IYV30.0I1IYV3_BRADI; Uncharacterized protein
STRINGBRADI5G13450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.12e-72NAC family protein