PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g08980.1.p
Common NameBRADI_5g08980, LOC100840998
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 503aa    MW: 53756.5 Da    PI: 7.6334
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g08980.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.16.5e-20115204186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +Wt+  +  L++a++e+ e+l+rg+l++ +We+v++++     ++g  +s +qCk+k++nl+kryk + +++++  + s+s++p+++q+e
  Bradi5g08980.1.p 115 EWTDGAISSLLDAYTERFEQLNRGNLRGRDWEDVAAAVtdgqGKGGAGKSVEQCKNKIDNLKKRYKVECTRNGGAGAASVSHWPWYRQME 204
                       5*************************************9999999****************************9999999*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.9E-21113206No hitNo description
Gene3DG3DSA:3.40.1160.101.6E-72258495IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.62E-53260495IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.063260496IPR015963Uridylate kinase, bacteria
PfamPF006965.1E-19263475IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042547.74E-112263496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHPAPQ PSAQPPPPQQ AQTFCFVDAP ATGSGSGPFV PAQEEGNHSS  60
ERGKASHHSK RRRERAEEFS DGGEYCSYIS SSAGGRKGRG GGGGGSSDYR KDREEWTDGA  120
ISSLLDAYTE RFEQLNRGNL RGRDWEDVAA AVTDGQGKGG AGKSVEQCKN KIDNLKKRYK  180
VECTRNGGAG AASVSHWPWY RQMEQIIGNS SSPGTSKPLA PTNDEKPRQL LQNANKRYPS  240
SGTGPPTMVP CSRLTPLSNP KWKRVLLKIG GTALAGEAPH NVDPKVIMLI AREVQVACRH  300
GVEVAIVMGA RNIFCGDNWV AATGTDRAST HPVGMMAAVM NAVLLQASLE KIGVETRVQT  360
ALMMQEVAEP YIRRRAMRHL QKGRVVIFGG IGACIGNPLF TTDTAAALRA SEINADVVLK  420
GIAGDDEYGC PPRSNSNALF EHISFRELAA RGTSSMDMTA ITCCEENNIP VVIFNMLEPG  480
NISRAICGDQ VGTLVDQSGR IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A7e-612604955238uridylate kinase
1z9d_B7e-612604955238uridylate kinase
1z9d_C7e-612604955238uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101GGRKGRGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g08980.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699350.0AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581179.10.0uncharacterized protein LOC100840998 isoform X1
TrEMBLI1IXE00.0I1IXE0_BRADI; Uncharacterized protein
STRINGBRADI5G08980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-161Trihelix family protein