PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi5g06620.1.p

Common Name

BRADI_5g06620, LOC100833546

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 419aa MW: 44016.2 Da PI: 6.7413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi5g06620.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.8e-10	257	304	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Bradi5g06620.1.p 257 SHSLAERVRRKRISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 304 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.22E-16	251	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.88E-11	251	308	No hit	No description
PROSITE profile	PS50888	15.415	253	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-16	253	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-7	257	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-9	259	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MANDHFFPGD YFSSGLSAPF LGASYAQAPP SRSSGLDAAA MAFGLPWADQ QLPGAADSSA 60 ATTTAHFDSA LSSLVSSPAS AFFAHGGEDD VAIGDLIGRL GGICNGASAN NSCYSTPLSS 120 PPRGPPLPPA AFRALETGRL SRVSSSKSLG APATALEYAE AEASPNTSAM PDPPATTKGA 180 ARKRKAPAKC KAKAEPSPPL PATAVTNAIP KRPRVTDGGS SDENAAVPAK VELEEEKPEP 240 VKDYIHVRAR RGQATDSHSL AERVRRKRIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV 300 QSLQRQVEFL SMKLSTMNPQ LDLDGQYKPS KDMNQVTMPA YASDEPAGAF SYASSPADSF 360 AMGSAVAHHG LELQGTFSWE HDLQSMVQMG GASSSSHSQD PHAFYGQQTT VNHMKVEP*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MANDHFFPGD YFSSGLSAPF LGASYAQAPP SRSSGLDAAA MAFGLPWADQ QLPGAADSSA  60
ATTTAHFDSA LSSLVSSPAS AFFAHGGEDD VAIGDLIGRL GGICNGASAN NSCYSTPLSS  120
PPRGPPLPPA AFRALETGRL SRVSSSKSLG APATALEYAE AEASPNTSAM PDPPATTKGA  180
ARKRKAPAKC KAKAEPSPPL PATAVTNAIP KRPRVTDGGS SDENAAVPAK VELEEEKPEP  240
VKDYIHVRAR RGQATDSHSL AERVRRKRIS ERMKLLQSLV PGCNKITGKA LMLDEIINYV  300
QSLQRQVEFL SMKLSTMNPQ LDLDGQYKPS KDMNQVTMPA YASDEPAGAF SYASSPADSF  360
AMGSAVAHHG LELQGTFSWE HDLQSMVQMG GASSSSHSQD PHAFYGQQTT VNHMKVEP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi5g06620.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014751112.1	0.0	transcription factor bHLH78 isoform X1
Swissprot	Q9SRT2	2e-58	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0Q3GMZ3	0.0	A0A0Q3GMZ3_BRADI; Uncharacterized protein
STRING	BRADI5G06620.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-47	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi5g06620.1.p
Entrez Gene	100833546

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]