PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g00478.1.p
Common NameBRADI_5g00478
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 462aa    MW: 50969.3 Da    PI: 4.4856
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g00478.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57344.35e-14138226498
            DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                        r+ws +De+ +L +l+  ++++g+ p+   da++e + ++++  ++ +++l +K   L++++++  k+   g+  + +kehd+  ++ls++i
  Bradi5g00478.1.p 138 PRIWSTDDEVRILEALVAHRQEHGVLPHP--DALMEALAGKLDNrTYGSKELHSKQTTLRQRYNNAIKR---GE--VPTKEHDRRLYDLSNII 223
                       69**********************77666..5899*99999986257899******************9...54..5689************* PP

            DUF573  96 Wgs 98 
                       Wgs
  Bradi5g00478.1.p 224 WGS 226
                       *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.2E-19138225IPR007592Protein of unknown function DUF573
PfamPF004931.7E-8296366IPR001208MCM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAPKRQAQPP PPPVASSEET DSRSRSDESE DEETALASPP PPTTNPPAPP HKGEEFETTD  60
DDDQEEDDED EEEREPARAA PKNPLPAPQQ QGEESDEEGE SSESDEEAPP PEQAAKMEAE  120
KLKPPPSSGE AKKPGGIPRI WSTDDEVRIL EALVAHRQEH GVLPHPDALM EALAGKLDNR  180
TYGSKELHSK QTTLRQRYNN AIKRGEVPTK EHDRRLYDLS NIIWGSGKTA AAKANGDEPR  240
SFAEMCELYP YLAEEVKELE AEHPGLFKRE FGKMDDDKAR VMDAKIKRQR LVQMKVEMRR  300
GDLTKELLQA SDHIAASYVD LRGGGANAKS GGGTLPITAR TLETIIRVST AHAKMKLSSG  360
NDLMDVDVGT TSNDQDVSSQ RKGSWRVKKN SIVKLHKEDG TLTDNQAEIE NMATDYFQAL  420
FTKDASVQPA PLIDCIEAVD AEMNHDLCKM FTDEEISDAL F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289KIKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi5g00478.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634303e-47AK063430.1 Oryza sativa Japonica Group cDNA clone:001-115-D09, full insert sequence.
GenBankAK0993693e-47AK099369.1 Oryza sativa Japonica Group cDNA clone:J033048C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311955.10.0uncharacterized protein LOC100829980 isoform X2
RefseqXP_024311956.10.0uncharacterized protein LOC100829980 isoform X2
TrEMBLA0A0Q3I5L80.0A0A0Q3I5L8_BRADI; Uncharacterized protein
STRINGBRADI5G00487.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Representative plantOGRP1106545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.16e-10DNA-binding storekeeper protein-related transcriptional regulator