PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g44093.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 657aa    MW: 69496.6 Da    PI: 6.69
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g44093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.28.5e-1222726442374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilk 92 
                        +lLl+cAe v++++l  aq++L ++ ela+p g+++qR+aayf+eA +arl+ s+ +ly+ lpp +++ +     + +aa+++f+ +sP++k
  Bradi4g44093.1.p 272 LTLLLQCAESVNADNLDDAQSALLEIAELATPFGTSTQRVAAYFAEAVSARLVTSCLGLYAPLPPHSAAASItgGRKIAAAFQVFNGISPFVK 364
                       579************************************************************888777655678899999************ PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       fsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s ++le+tg+rL++fA++lg+pfef + va++
  Bradi4g44093.1.p 365 FSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLPFEFCA-VADK 452
                       *********************************************************....***************************.7*** PP

              GRAS 186 ledleleeL.........rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         +l++e+L          v + +Ea+aV++ +  h+l+d +++ ++    +L l+++l Pkvv++veq+++h s+sFl+rf+ea++yysalf
  Bradi4g44093.1.p 453 AGNLDPEKLlngggggggGVGRrREAVAVHWLH--HSLYDVTGNDAN----TLGLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSALF 538
                       *********88888888744445*********9..999999999998....**********************.899**************** PP

              GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                       dsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + +++Wr++l ++GF+p++l  +aa+qa lll +++sdgy++ ee+g+l lg
  Bradi4g44093.1.p 539 DSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPARTGDAKFVGSWRDKLARSGFGPASLAGSAAAQAALLLGMFPSDGYTLVEENGALKLG 631
                       ********************************************************************************************* PP

              GRAS 362 WkdrpLvsvSaWr 374
                       Wkd  L+++SaWr
  Bradi4g44093.1.p 632 WKDLCLLTASAWR 644
                       ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.052245624IPR005202Transcription factor GRAS
PfamPF035142.9E-119272644IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MGSLFFPSSS SSSSYPPSHA SDSTAFLHHH LLDHHQHAAA AMVRKRPAPD MDNLPPPRRH  60
VTGDLSDVLA AANAAAPPQQ QQQLPTAQLP ALPTQLLPPP TPFQHQQHQQ EQQHHMDVAA  120
ANPGGVAATT AFVDGIIRDI IGSCHAGHGG GGVSVAQLIH NVREIIHPCN PALASLLELR  180
LRSLLSPAAS DLPPPHPSLQ SLPVSPPAAA LPPPPPPPPD KLISSPPPQP ESPKQPPPPT  240
PEQTAAAAQA AAKSRRETQL RKQRDEEGLH LLTLLLQCAE SVNADNLDDA QSALLEIAEL  300
ATPFGTSTQR VAAYFAEAVS ARLVTSCLGL YAPLPPHSAA ASITGGRKIA AAFQVFNGIS  360
PFVKFSHFTA NQAIQEAFER EDRVHIIDLD IMQGLQWPGL FHILASRPGG PPRVRLTGLG  420
ASMDALEATG KRLSDFADTL GLPFEFCAVA DKAGNLDPEK LLNGGGGGGG GVGRRREAVA  480
VHWLHHSLYD VTGNDANTLG LIQRLAPKVV TMVEQDLSHS GSFLARFVEA IHYYSALFDS  540
LDASYGEDSP ERHVVEQQLL SREIRNVLAV GGPARTGDAK FVGSWRDKLA RSGFGPASLA  600
GSAAAQAALL LGMFPSDGYT LVEENGALKL GWKDLCLLTA SAWRPMVQTT PSSSAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.02556453380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g44093.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239549.20.0protein SCARECROW
SwissprotQ2RB590.0SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A2K2CU340.0A0A2K2CU34_BRADI; Uncharacterized protein
STRINGMLOC_64716.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein