PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g36300.1.p
Common NameBRADI_4g36300
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 924aa    MW: 102551 Da    PI: 5.9064
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g36300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.61.3e-05685745154
                       TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                       r+kRt +++ q++e e++ + ++ +  +a++ +  A+kl     ++t +q k+W  Nr+ak
  Bradi4g36300.1.p 685 RKKRTIMNDGQVNEIENALNDEPEMhkNATSLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 745
                       89******************865552277899****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-6666746IPR009057Homeodomain-like
PROSITE profilePS5007110.689682749IPR001356Homeobox domain
CDDcd000860.00551685748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MIDMVSAIEE LSGLPSRELS EMLKESESFV LQYKAEDGGP KQVDMEKLVS SLPLHLLAVC  60
LELGRDSDLT YVLRGIRFLH SLSELATRYT RLEQLLLDDV KLSEQVMDLI LFVLTILAHQ  120
KKENHLGASP FIHSSLVAAS LHLLTSYFSS QCHELVHILL AHSKVDIFMD VAFESLHEDM  180
KLLSLRLSTL GTDAFPVGPF DSQLTHFICQ QCEASLQFLL LLCQQKLFRD RIFKNKELCR  240
KGGILSLSLT ILKLGVPECL QGSTHIVSSI SRLKAKVLSI VLQLCEAESI SYLDEVATLP  300
KSMQLGQTLA LEVLDLLKTA FGRKEKPAAG SHDKSFPMGS VLISALRLVD VFSDDSNFRS  360
SFITNTIPFL TQILATPHDE FSSSWCSVNM PVIEEDANLE YDPFGAAELA LVAASDIDML  420
TEAKANYSCP LRTISVSTIT YAQTRTSYVV KIIANLHVFV PNICEEQERD LFLQKFQKYL  480
LSESPRPSLD HPASDEATTV CRNLESLSRY AKSLIPNHLL NEEDVQLLSE FAYKLQKWCE  540
SLAGLRTLQV AKSETSLQIK EDLQKVIHHL TGRLTTVPNS NMNNPLKDAQ NMEESTPTPS  600
MKQEGNARDE TPRKRASINC GLLQNSVGQN LIHLGVARTT KTGYPGVSTA TSTVLQHCRS  660
VDHFKTPEPT TESGLQDDDE RQRKRKKRTI MNDGQVNEIE NALNDEPEMH KNATSLQAWA  720
EKLSGQGSEI TSSQLKNWLN NRKAKLARVA KERGVPCEGD NADKPSTPAT SHFGDSSESA  780
GEESYFPPPR VMNALGISKG NGQLNQGTND TTTQAESNQN IMMSCPFTKS YSFELGRPVL  840
LIDNQGNEIG RGEIFQVEGM AQGKSLTESH ICIINITDLK IEKWRELPHP SEASGRTFQE  900
AESRHGGVMR VAWDVIRLAP VVP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1682686RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g36300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318859.10.0nodulin homeobox isoform X1
TrEMBLA0A0Q3LEZ40.0A0A0Q3LEZ4_BRADI; Uncharacterized protein
STRINGBRADI4G36300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418
Representative plantOGRP385357