PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35950.1.p
Common NameBRADI_4g35950, LOC100822070
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 212aa    MW: 23250.9 Da    PI: 6.4928
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35950.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.5e-08333434
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                      ++C+ +e+  + lfC  ++  lC++C ++ H
  Bradi4g35950.1.p  3 TICDVCESAVAVLFCAADEAALCRSCDEKVH 33
                      68**************************998 PP
2zf-B_box24.94.3e-085291237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      +  +C+ +e+ ++ ++C  +++ lC +C ++ H g    H
  Bradi4g35950.1.p 52 KLVRCDICENSPAFFYCDIDGTSLCLSCDMAVHVGgkrtH 91
                      6789***************************996545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003366.5E-9147IPR000315B-box-type zinc finger
PfamPF006435.7E-6334IPR000315B-box-type zinc finger
CDDcd000214.80E-7345No hitNo description
SMARTSM003367.0E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.6555196IPR000315B-box-type zinc finger
PfamPF006432.9E-65291IPR000315B-box-type zinc finger
CDDcd000213.24E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTICDVCES AVAVLFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP NKLVRCDICE  60
NSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR VEFPGDKPGN MDDVPMQQIE  120
SENQRDQNKA PHSVPKEQMV SHHHAYDNHA SDGNCNGQGN IDSKMFDLNM RPARNHGQGS  180
SSQTQAVDHS ANNHDSSGVV PTCNLERDTN K*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35950.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741330.0AK374133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578491.11e-157B-box zinc finger protein 18
SwissprotC0SVM51e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLI1IS391e-156I1IS39_BRADI; Uncharacterized protein
STRINGBRADI4G35950.11e-156(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-74DBB family protein