PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g34800.1.p | ||||||||
Common Name | BRADI_4g34800, LOC100821743 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 24830.1 Da PI: 10.5665 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 120.7 | 1.3e-37 | 17 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ v +++PwdLp +e + yfFs r+ atg+ ++r ++sgyWkatgk+k+v Bradi4g34800.1.p 17 LPPGFRFHPTDEELVVQYLRRKALARPLPA-AVIPVVhAAATLDPWDLPGV--SEGEAAYFFSLRQAP-ATGRGSRRRASSGYWKATGKEKPV 105 79***************************9.889999567788******43..356788****99876.577778888899************ PP NAM 93 lsk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ +vg+k+ L+f+ g+ +k+++t Wvmheyrl Bradi4g34800.1.p 106 FVQfppssgygggngkRQLVVGVKTALAFHLGNGKKPSRTGWVMHEYRL 154 **999999998876554555***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-44 | 13 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.011 | 17 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-24 | 18 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MERRPVAAGD AARPQQLPPG FRFHPTDEEL VVQYLRRKAL ARPLPAAVIP VVHAAATLDP 60 WDLPGVSEGE AAYFFSLRQA PATGRGSRRR ASSGYWKATG KEKPVFVQFP PSSGYGGGNG 120 KRQLVVGVKT ALAFHLGNGK KPSRTGWVMH EYRLAAAAAE QKKASGEWVV CRVSLKSGAR 180 RPAGAEDRAP HVVHREEPGR RQPSPSLSPS SSCVTDTCQV SDQEEISSSQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-29 | 17 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-29 | 17 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-29 | 17 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-29 | 17 | 179 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-29 | 17 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swm_B | 9e-29 | 17 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swm_C | 9e-29 | 17 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swm_D | 9e-29 | 17 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swp_A | 9e-29 | 17 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swp_B | 9e-29 | 17 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swp_C | 9e-29 | 17 | 179 | 20 | 171 | NAC domain-containing protein 19 |
3swp_D | 9e-29 | 17 | 179 | 20 | 171 | NAC domain-containing protein 19 |
4dul_A | 8e-29 | 17 | 179 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 8e-29 | 17 | 179 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g34800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576724.1 | 1e-167 | NAC domain-containing protein 41 | ||||
Swissprot | O22798 | 2e-44 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | I1IRM9 | 1e-165 | I1IRM9_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G34800.1 | 1e-166 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 | Representative plant | OGRP13125 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 4e-29 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g34800.1.p |
Entrez Gene | 100821743 |
Publications ? help Back to Top | |||
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