PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g33557.2.p

Common Name

BRADI_4g33557, LOC100828022

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 393aa MW: 42302.2 Da PI: 7.2924

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g33557.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	229	248	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Bradi4g33557.2.p 229 FSCPVCFKTFNRYNNMQMHM 248 89*****************9 PP
2	zf-C2H2	11.1	0.0012	315	335	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ Bradi4g33557.2.p 315 CRRCGKAFAVKGDWRTHEKNC 335 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.64	229	256	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.7E-6	229	248	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	231	251	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.04E-6	295	333	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.2E-5	300	333	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.538	313	333	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MENPYTTFLK NYHQQTHRRP RYYNCPATPT PSPAPPPPLS AYSSLFFPPP PGPPPAAPAP 60 PSPPLREALP LLSLAPAASS HVSRERRPGP DSDDDEADED EAPGPTSSSS NQRREGARRL 120 FADLNSKAAD DDDDPMDVER GGSMAAEGPN VTVALRIGLP SAAAADLISG ISSSAAAATA 180 SSRDEEEEEE DGGGVAAALG FASAAIGRLN KGQYWIPTPT QILIGPTQFS CPVCFKTFNR 240 YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNVDHPR AKPLKDFRTL 300 QTHYKRKHGL KPFLCRRCGK AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK RSLKDHARAF 360 GRGHGAIGGG GLDDDDDCGA VSDVDHDDGA GV*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MENPYTTFLK NYHQQTHRRP RYYNCPATPT PSPAPPPPLS AYSSLFFPPP PGPPPAAPAP  60
PSPPLREALP LLSLAPAASS HVSRERRPGP DSDDDEADED EAPGPTSSSS NQRREGARRL  120
FADLNSKAAD DDDDPMDVER GGSMAAEGPN VTVALRIGLP SAAAADLISG ISSSAAAATA  180
SSRDEEEEEE DGGGVAAALG FASAAIGRLN KGQYWIPTPT QILIGPTQFS CPVCFKTFNR  240
YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNVDHPR AKPLKDFRTL  300
QTHYKRKHGL KPFLCRRCGK AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK RSLKDHARAF  360
GRGHGAIGGG GLDDDDDCGA VSDVDHDDGA GV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g33557.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356814	0.0	AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576670.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-121	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0Q3HR76	0.0	A0A0Q3HR76_BRADI; Uncharacterized protein
STRING	BRADI4G33557.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-104	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bradi4g33557.2.p
Entrez Gene	100828022

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]