PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g32580.1.p

Common Name

BRADI_4g32580, LOC100835662

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 291aa MW: 30767.4 Da PI: 7.1777

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g32580.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.5	5.9e-32	56	111	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhA+ +GghavDGCgEf+++ geegt++al+CaAC CHRnFHRre+ + Bradi4g32580.1.p 56 GVRYRECLKNHAVGIGGHAVDGCGEFIAA-GEEGTIDALRCAACTCHRNFHRRESPN 111 69************************9.999******************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-26	38	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.1E-29	57	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.6E-29	58	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.243	59	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.18E-21	212	286	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-33	217	287	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.4E-26	225	281	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDFDDHDDAD EEMAPMPVSS SYETPPPLGG GAEIAPNKPP GEPGIGGRAD AKAPAGVRYR 60 ECLKNHAVGI GGHAVDGCGE FIAAGEEGTI DALRCAACTC HRNFHRRESP NEFPAGEGVQ 120 GASPLFSPAA YGAMVPHHQF SPYYRTPAGY LHHHHQHHMA MAAAAAGHPP RPLALPSTSH 180 SRDDADELSG GMAVGPMSAV GPLSSMSLGG AGPSGYGSGG SGSGKKRFRT KFTQEQKDRM 240 LAFAERVGWR IQKHDEAAVQ QFCDEVGVKR HVLKVWMHNN KHTLGKKPSI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-29	226	283	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g32580.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU972655	8e-96	EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
GenBank	EU974775	8e-96	EU974775.1 Zea mays clone 457946 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576623.1	0.0	zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-125	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	I1IQW1	0.0	I1IQW1_BRADI; Uncharacterized protein
STRING	BRADI4G32580.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	6e-57	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Bradi4g32580.1.p
Entrez Gene	100835662

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]