PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g30240.1.p
Common NameBRADI_4g30240, LOC100825855
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 353aa    MW: 37134.7 Da    PI: 9.0393
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g30240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.72e-313693258
       ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                      + v+Y++Cl+NhAa+lG+havDGC+Ef+p+++++ +++ +lkCaACgCHRnFHRr  +
  Bradi4g30240.1.p 36 QVVTYQDCLRNHAANLGAHAVDGCREFLPTPENNpADPWSLKCAACGCHRNFHRRVLV 93
                      5799***************************9999********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-203899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-263891IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.8E-253990IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.9234091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.67E-14218285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-26223286IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-21227283IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDVKYKPVAF PNGSAKKPVK PAAAAVAMAP PPPSSQVVTY QDCLRNHAAN LGAHAVDGCR  60
EFLPTPENNP ADPWSLKCAA CGCHRNFHRR VLVEDSPPPL PQQRRGEEET PVERLPGVDS  120
DSDSDGSGSG YDDERSMSPP PPTQQHQPPV AHNPAPVAQQ PPAPPGAYFS PALAPAPHML  180
LSLNSSSAPG AAQQRLPVSP VAAAQMVPAG PVPAQHLGAM PMMPAQRKRF RTKFTLEQKK  240
RMQELSERLG WRLQKRDEAI VDDRCRDIGV SKGVFKVWMH NNKHNYLGGH SARRSASASS  300
AVATTTTASG ADAAAAPPPP FNPSEAPAAT GFNMNGTGGH PVNGGASSSQ SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A9e-192272851775ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226240RKRFRTKFTLEQKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g30240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0695006e-88AK069500.1 Oryza sativa Japonica Group cDNA clone:J023022H01, full insert sequence.
GenBankAP0056366e-88AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149656e-88AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576527.10.0zinc-finger homeodomain protein 9
SwissprotQ6ER217e-74ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLI1IQ450.0I1IQ45_BRADI; Uncharacterized protein
STRINGBRADI4G30240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP1472434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-24homeobox protein 34