PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g18891.1.p | ||||||||
Common Name | BRADI_4g18891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 397aa MW: 42421.6 Da PI: 8.9226 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.6 | 5.4e-41 | 140 | 216 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCe+hsk+pvv+v+g+e+rfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q Bradi4g18891.1.p 140 CSVDGCRSDLSRCREYHRRHKVCEAHSKTPVVVVAGQEKRFCQQCSRFHMLAEFDEGKRSCRKRLDGHNRRRRKPQY 216 **************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.5E-33 | 135 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.094 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.71E-39 | 138 | 219 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.1E-30 | 140 | 213 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MPHGHTPSST ERYCHTSSDP CPELHTRTLC APSRPARASA RHCAAAVVAP RRLPPTSGGS 60 RRIVRFFLAR MDWAAAPEAA SWGVAAEAVA DPGPTMLSFA SPSFSSSAAV AAQLQDRSRP 120 ASVTARRDRA PGSAAGTVAC SVDGCRSDLS RCREYHRRHK VCEAHSKTPV VVVAGQEKRF 180 CQQCSRFHML AEFDEGKRSC RKRLDGHNRR RRKPQYDAMN PSSFFPYHQV NKFSVYPRTF 240 PIADPNAGAS MHPLEHHRPF SISFSGTTKA PKHFPFLQDG SSIYSTASPT LPQPFSSRED 300 GNNTSSSTCN GLSSALDPEC ALSLLSSSLH LSPISIPSAT VPAQFASSLA RTAVDSQAAT 360 IAFASGGDCG GGGGHVLVAD AMLEDPSQGL PFCWQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-27 | 134 | 213 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 213 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g18891.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577554.2 | 0.0 | putative squamosa promoter-binding-like protein 19 | ||||
Swissprot | Q2R3Y1 | 1e-116 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | A0A0Q3ELQ9 | 0.0 | A0A0Q3ELQ9_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G18900.1 | 1e-153 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-43 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g18891.1.p |