PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g16750.1.p
Common NameBRADI_4g16750, LOC100821648
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 301aa    MW: 32293.4 Da    PI: 6.7308
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g16750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.3e-304107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++ +
  Bradi4g16750.1.p   4 SCNGCRVLRKGCSEGCTIRPCLewiksPDAQANATVFLAKFYGRAGLLNLLAAGPDDLRPALFRSLLYEACGRMVNPIYGSVGLLWSGRWEAC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallke 99 
                       q+++e++l +e
  Bradi4g16750.1.p  97 QAAVEAVLKGE 107
                       *****998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6623109IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEGCT IRPCLEWIKS PDAQANATVF LAKFYGRAGL LNLLAAGPDD  60
LRPALFRSLL YEACGRMVNP IYGSVGLLWS GRWEACQAAV EAVLKGERIV QVSSESVPAG  120
QDTPPLRAYD IRHVAKDKEA ADPLRVSRAG RTRFKRASSS TSKSNKGAKS VSPTPRQEPE  180
QHDDHGRAPS REPCHEESAG SHNHGHVDDE GMVIGVEQTR EESGQDTEVE AGSHVSQAEQ  240
SPLPVPPMRH VVHEEIGLEL TLGLEPPAVT RLAMSPLARF DVSGLSAESS HIGLGLGLPA  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g16750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954391e-133FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310952.10.0LOB domain-containing protein 42
SwissprotQ9M8866e-75LBD41_ARATH; LOB domain-containing protein 41
TrEMBLI1IL930.0I1IL93_BRADI; Uncharacterized protein
STRINGBRADI4G16750.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-68LOB domain-containing protein 41