PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi4g16740.1.p | ||||||||
Common Name | BRADI_4g16740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 291aa MW: 30853.8 Da PI: 6.6215 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.1 | 7.6e-30 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++ + Bradi4g16740.1.p 4 SCNGCRVLRKGCSEGCTIRPCLewiksPDAQANATVFLAKFYGRAGLLNLLAAGPDDLRPALFRSLLYEACGRMVNPIYGSVGLLWSGRWEAC 96 6******************************************************************************************** PP DUF260 89 qlkaelallke 99 q+++e++l +e Bradi4g16740.1.p 97 QAAVEAVLKGE 107 ****9988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.426 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.2E-24 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 291 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEGCT IRPCLEWIKS PDAQANATVF LAKFYGRAGL LNLLAAGPDD 60 LRPALFRSLL YEACGRMVNP IYGSVGLLWS GRWEACQAAV EAVLKGEPVV QVSSEAVPSA 120 QATPPLRAYD IRHVAKDPEA ADPLRVSRAG RTRFKRGASS STSKTKKVSA SAGAKSFSPA 180 PRQESEQAPS HEESAGSHNH GHVDDEGMMM GVEQTREQSD QDTEAEAGSH VSQAEQSPVP 240 PMRQEEIGLE LTLGLEPSVT RVARSPLAPL DLSGLSAESS HIGLGLALPA * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi4g16740.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP095439 | 1e-147 | FP095439.1 Phyllostachys edulis cDNA clone: bphylf039l14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310953.1 | 0.0 | LOB domain-containing protein 42-like | ||||
Swissprot | Q9M886 | 2e-78 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | I1IL92 | 0.0 | I1IL92_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G16740.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 3e-69 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi4g16740.1.p |