PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g11517.1.p
Common NameBRADI_4g11517, LOC100839444
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 929aa    MW: 102731 Da    PI: 6.0839
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g11517.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.37.2e-05691751154
                       TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                       r+kRt +++ q++e e++   ++ +  +a+  +  A+kl     ++t +q k+W  Nr+ak
  Bradi4g11517.1.p 691 RKKRTIMNDGQINEIENALVGEPEMhrNATLLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 751
                       89****************9986666114556899999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-6673752IPR009057Homeodomain-like
PROSITE profilePS500719.961688755IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MPPSPPAPPS PRSRGLGVPV SEMIDMVSAI EELSGLTSRE LSEMLKESES FVLQCKAEDG  60
GPKQVDMEKL VSSLPRHLLA VCLELGSGSE LTYVLRGMRF LHSLSELATR HTRLEQVLDD  120
VKLSVQVVDL IFFVLSILSN SKKENHLGAS PFIHSSLVAA SLHLLTSYFP SQYNELVSIL  180
LAHPEVDIFM DLAFDSLHED MRLLSRRLST FGTDAFPVGP LESQLTHFIC QQCETSLQLL  240
LLLCQQKLFR DRILENKDLC RNGRILSLSL TILKLGVPEC LKGSAHIASS ISRLKAKVLS  300
IVVQLCEAEG ISYLDEVATL PKSMQLGQTF ALKVLDLLKT AFGRKEKSVA GSHDKSYPMG  360
SVLISALRLV DVFSDDSNFR SSFINNTIPF LTQILASPHD EFVSSWCSVN MLVTEDDANL  420
EYDPFGAAEL ALLAASNMLT EAKANYLCPL RIINTAIPYA QRRTSCVVKI IANLHVFVPN  480
ICEEQERDLF LHKFQNYLLS ESPRPSLDNP ASDEASAVCR NLGSLSHYAK SLIPNKLLNE  540
DDVHLLSEFA CKLQTWCKSV AGLRTLQVAN SDTSSQIKED LQRVQQPLQT RANDVQTMEE  600
SVPTPYMNHE GNARDETPRN RASINCGLLQ NSVGQNLIHL GVARTTSTGY TGVSTATSTE  660
LQHGRSVDHF KTPEHIKGSG LQDDDERQRR RKKRTIMNDG QINEIENALV GEPEMHRNAT  720
LLQAWAEKLS GQGSEITSSQ LKNWLNNRKA KLARIAKERV PSEGENADKP STPATSHFGD  780
SSESAGEESY FPPPRVMNAL GISKGNGLLN PGTNDTTTQS EFNQNIMTTR PFTRSYSLEP  840
GRPVLLIDNE GNEIGRGEIF QVEGMAQGRS LTESRICIID ITELKIEKWR ELPHPSEASG  900
RTFQEAESRH GGVMRVAWDV IRIAPVVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1688693RRRKKR
2688694RRRKKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g11517.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237477.10.0nodulin homeobox isoform X1
TrEMBLA0A0Q3IMJ20.0A0A0Q3IMJ2_BRADI; Uncharacterized protein
STRINGBRADI4G11517.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418
Representative plantOGRP385357