PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi4g06867.1.p | ||||||||
Common Name | BRADI_4g06867, LOC100825639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 24727.1 Da PI: 9.5214 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.7 | 2.4e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk rqvtfskRr g+lKKA EL vLCda++a i+fs +g+ly+ys+ Bradi4g06867.1.p 10 RIENKVSRQVTFSKRRSGLLKKARELAVLCDADIAAIVFSANGNLYTYST 59 8***********************************************96 PP | |||||||
2 | K-box | 58.2 | 3.7e-20 | 94 | 173 | 20 | 99 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ L++++e L+++ R+l+Ge+L+sL+ + qqLeqq+ ++l++iR +++ ll ++i+el++ke+ l e+nk L++k + Bradi4g06867.1.p 94 DHILLRSQVEALRKSERNLMGEQLGSLTQRGVQQLEQQIGDALRSIRLRRDFLLANSIRELRNKERLLMEQNKILQRKKA 173 55679***********************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.151 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.36E-37 | 2 | 74 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-30 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.021 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.9E-17 | 94 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MGRGKVHLRR IENKVSRQVT FSKRRSGLLK KARELAVLCD ADIAAIVFSA NGNLYTYSTQ 60 SSMDKILERY QRCSLSEGGV IEDYSELEGS TNSDHILLRS QVEALRKSER NLMGEQLGSL 120 TQRGVQQLEQ QIGDALRSIR LRRDFLLANS IRELRNKERL LMEQNKILQR KKAELLQASM 180 HKNCTSAFCN AAAASLPNLN ISIEDGNSDN EPAGSVMASV D* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-19 | 1 | 109 | 1 | 92 | MEF2C |
5f28_B | 4e-19 | 1 | 109 | 1 | 92 | MEF2C |
5f28_C | 4e-19 | 1 | 109 | 1 | 92 | MEF2C |
5f28_D | 4e-19 | 1 | 109 | 1 | 92 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi4g06867.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF469326 | 0.0 | KF469326.1 Brachypodium distachyon MADS-box transcription factor 31 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288315.1 | 1e-160 | MADS-box transcription factor 20-like | ||||
Swissprot | Q2QQA3 | 6e-69 | MAD20_ORYSJ; MADS-box transcription factor 20 | ||||
TrEMBL | I1II85 | 1e-158 | I1II85_BRADI; MADS-box transcription factor 31 | ||||
STRING | BRADI4G06867.1 | 1e-159 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14643 | 21 | 21 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 6e-54 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi4g06867.1.p |
Entrez Gene | 100825639 |
Publications ? help Back to Top | |||
---|---|---|---|
|