PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g57960.4.p

Common Name

BRADI_3g57960, LOC100833178

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 356aa MW: 38424.8 Da PI: 10.3352

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g57960.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.3	3.9e-14	275	318	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsRqRK+ ++ eLe++v++L++ N++L+k+ Bradi3g57960.4.p 275 RRQRRMIKNRESAARSRQRKQSYMMELETEVAKLKERNEELQKN 318 79*************************************99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.5E-12	271	336	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.036	273	317	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.3E-12	275	318	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.48E-10	275	325	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-14	275	328	No hit	No description
CDD	cd14707	1.74E-21	275	327	No hit	No description
PROSITE pattern	PS00036	0	278	293	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDFPGGSGRQ QNQQQPLPPM TPLPLGRQGS SVYSLTFDEF QSALGGPGKD FGSMNMDELL 60 RNIWTAEESQ ALGAVVANAS SSSAAAGADQ GAGAQPIQRQ GSLTLPRTMS QKTVDEVWRD 120 MVYFGGPSAA PAAAELPPAQ RQQTLGEVTL EEFLVRAGVV REDMAGPPPP VSPAPAAQAQ 180 QPPPPQPQML FPQSNMFAPM VNPLSLGNGM MAGAFGQGGG GATTAVSPAR PVLSNGFGKM 240 EGLNLSSLSP PPMPYVFNGG LRGRKAPAME KVVERRQRRM IKNRESAARS RQRKQSYMME 300 LETEVAKLKE RNEELQKNQV EMLERQKNEV FENIRRQVGP KSKRICLRRT LTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDFPGGSGRQ QNQQQPLPPM TPLPLGRQGS SVYSLTFDEF QSALGGPGKD FGSMNMDELL  60
RNIWTAEESQ ALGAVVANAS SSSAAAGADQ GAGAQPIQRQ GSLTLPRTMS QKTVDEVWRD  120
MVYFGGPSAA PAAAELPPAQ RQQTLGEVTL EEFLVRAGVV REDMAGPPPP VSPAPAAQAQ  180
QPPPPQPQML FPQSNMFAPM VNPLSLGNGM MAGAFGQGGG GATTAVSPAR PVLSNGFGKM  240
EGLNLSSLSP PPMPYVFNGG LRGRKAPAME KVVERRQRRM IKNRESAARS RQRKQSYMME  300
LETEVAKLKE RNEELQKNQV EMLERQKNEV FENIRRQVGP KSKRICLRRT LTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates abscisic acid (ABA) signaling (PubMed:18931143, PubMed:19947981, PubMed:27424498, PubMed:27325665). Can regulate the expression of a wide spectrum of stress-related genes in response to abiotic stresses through an ABA-dependent regulation pathway. Confers ABA-dependent drought and salinity tolerance (PubMed:18931143, PubMed:27325665). Binds specifically to the ABA-responsive elements (ABRE) in the promoter of target genes to mediate stress-responsive ABA signaling (PubMed:27325665, PubMed:27424498). {ECO:0000269\|PubMed:18931143, ECO:0000269\|PubMed:19947981, ECO:0000269\|PubMed:27325665, ECO:0000269\|PubMed:27424498}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g57960.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) (PubMed:18315698, PubMed:18931143). Induced by drought, salt and osmotic stresses (PubMed:18931143). {ECO:0000269\|PubMed:18315698, ECO:0000269\|PubMed:18931143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010236076.1	0.0	bZIP transcription factor 23 isoform X1
Swissprot	Q6Z312	1e-151	BZP23_ORYSJ; bZIP transcription factor 23
TrEMBL	I1IEV0	0.0	I1IEV0_BRADI; Uncharacterized protein
STRING	BRADI3G57960.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	2e-41	ABRE binding factor 4

Link Out ? help Back to Top
Phytozome	Bradi3g57960.4.p
Entrez Gene	100833178

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang Y,Tang N,Du H,Ye H,Xiong L Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice. Plant Physiol., 2008. 148(4): p. 1938-52 [PMID:18931143] Shen J,Xie K,Xiong L Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. Mol. Genet. Genomics, 2010. 284(6): p. 477-88 [PMID:20941508] Luo C,Guo C,Wang W,Wang L,Chen L Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice. Plant Cell Rep., 2014. 33(2): p. 323-36 [PMID:24247850] Sakuraba Y, et al. Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle. Plant Cell Physiol., 2015. 56(12): p. 2325-39 [PMID:26443376] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774] Dey A,Samanta MK,Gayen S,Sen SK,Maiti MK Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes. PLoS ONE, 2016. 11(3): p. e0150763 [PMID:26959651] Zong W, et al. Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes. Plant Physiol., 2016. 171(4): p. 2810-25 [PMID:27325665] Dey A,Samanta MK,Gayen S,Maiti MK The sucrose non-fermenting 1-related kinase 2 gene SAPK9 improves drought tolerance and grain yield in rice by modulating cellular osmotic potential, stomatal closure and stress-responsive gene expression. BMC Plant Biol., 2016. 16(1): p. 158 [PMID:27411911] Gui J, et al. OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice. Dev. Cell, 2016. 38(2): p. 201-13 [PMID:27424498]