PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g55120.1.p | ||||||||
Common Name | BRADI_3g55120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 426aa MW: 47656.8 Da PI: 5.7173 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 67.3 | 2.5e-21 | 251 | 296 | 1 | 46 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 k r+rWt+eLHe Fv a+ +LGGsekAtPk++ ++mkv+gLt++h Bradi3g55120.1.p 251 KSRMRWTTELHELFVGAIIKLGGSEKATPKAVQKIMKVEGLTIYHF 296 68******************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.3E-8 | 249 | 295 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 249 | 295 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-14 | 251 | 295 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 2.1E-17 | 339 | 385 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MYTAILDTST MSQFRDGEVP WYLSSDITVL PALPEVMVPS FPQYSASYIE RGLCRSSITP 60 LNTFLPASSG LQSTYMSASN FTSDLCINNG LPNEKLSSGS HIIAISGFDT SLSSTHSSYK 120 DDPSSLRMLY PKVSEEIYWV QEPVPGVFDY PASLNVSDQR NLVVSQEMQD IITLDHDTHL 180 AKQKEWFSSE SSGKFLENSG CGGSVLKAVD TRSTAPPNYT YFHMQNNVSS HFNVDELCSD 240 NFPSSDTAPT KSRMRWTTEL HELFVGAIIK LGGSEKATPK AVQKIMKVEG LTIYHFSFIR 300 FHLCTNLEGY LCLHNFKHIS KYPKGGVMPW VCARDLEDMD TSEGLRTQIG LQKQLHEQLE 360 IQRKLQLQVE EHSKYLEMAI AKQGESLKQL GALPVFENSR TQVLDHIKAC EDQTVDFSGR 420 EALRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-17 | 251 | 303 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-17 | 251 | 303 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-17 | 251 | 303 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-17 | 251 | 303 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-17 | 251 | 303 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-17 | 251 | 303 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-17 | 251 | 303 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-17 | 251 | 303 | 2 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g55120.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235956.2 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 2 isoform X1 | ||||
TrEMBL | A0A0Q3I645 | 0.0 | A0A0Q3I645_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G55120.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5494 | 25 | 26 | Representative plant | OGRP16114 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 6e-32 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g55120.1.p |