PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g51510.3.p | ||||||||
Common Name | BRADI_3g51510, LOC100821218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Dof | ||||||||
Protein Properties | Length: 382aa MW: 39258.4 Da PI: 8.5888 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.6e-39 | 74 | 135 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Bradi3g51510.3.p 74 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 135 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-32 | 70 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-33 | 76 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDAAHWHQGL GLAKPMEEMM MPAGNQNPNA ANQNQNNQPP APPSGPEGVQ RAPAAAPAAA 60 AAAGGAERKA RPQKEKAINC PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRN 120 VPVGGGSRKN KRSSSSSSAA AAAVSTSAAA GTVPAANKNP KLMLQHEAGG GAHDLNLAFP 180 HHHGRVLHPS EFAASFPSLE SSAVMAAANG GGRGGMHQGA FSAMELLRST GCYVPLPQGM 240 QLGAMPPEYG FALGPEFRMP APPHQQQQQH HQQQQQVQNM LGFSLDTGAG GGYGAGLQGA 300 QESAASGRML FPFEDLKPGV VSAAAGGATG GDQFEHSKAD QGQGQGGNNS GGHETLGFWN 360 NSMIGNGGSN DAGGGGGGGS W* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g51510.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582413 | 9e-84 | KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756972.1 | 0.0 | dof zinc finger protein 2 isoform X1 | ||||
Swissprot | B9F1L8 | 1e-102 | DOF2_ORYSJ; Dof zinc finger protein 2 | ||||
TrEMBL | A0A0Q3QG61 | 0.0 | A0A0Q3QG61_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G51510.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 5e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g51510.3.p |
Entrez Gene | 100821218 |
Publications ? help Back to Top | |||
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