PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g50780.1.p | ||||||||
Common Name | BRADI_3g50780, LOC100837092 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 633aa MW: 66848.1 Da PI: 6.436 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 117 | 134 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F+++ +L H Bradi3g50780.1.p 117 VCENCGKEFTSWKSLLDH 134 6***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 5.2 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.65E-5 | 39 | 61 | No hit | No description |
PROSITE profile | PS50157 | 8.704 | 39 | 61 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.7E-5 | 39 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.65E-5 | 111 | 136 | No hit | No description |
SMART | SM00355 | 180 | 116 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.39 | 116 | 143 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.0E-8 | 301 | 324 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 302 | 329 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 302 | 324 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.5E-9 | 302 | 326 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 304 | 324 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.0E-8 | 430 | 457 | No hit | No description |
Pfam | PF13912 | 2.0E-12 | 434 | 458 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.46 | 435 | 457 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 435 | 457 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 437 | 457 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MAMVMENQQP VAPQMRMIPA PPPRPPPPPP PVPPQVFKHH CKVCKKGFMC GRALGGHMRA 60 HGIADVDGLS VEEDMLDDDD SEPYGESSDQ AGSPSTTTTK RMYGLRANPG RLRNCRVCEN 120 CGKEFTSWKS LLDHGRCSFG EDDEGLDGEG SLRSSSPRNG MEDEEEEEEE GDVALASGWS 180 KGKRSRRAKV MLLGSGTRTE LQHLPPASSE EEDLANCLVM LSSSRVTQPT DVIADVDQAE 240 SCASASKDEE MIRNKFLLPQ PISIIAPIAA SATQTMKFPV PHPVPQQVVV AQHVPAVPRG 300 LFECKACKKV FTSHQALGGH RASHKKVKGC FAAKLESSRN ETAAAAHQHH QSVATATHYD 360 SNTKASISEV VDTSTTDLKT SASVDANADG GKVSTSGGEI VIVATTAAPE TGIADVAPAA 420 PSSALAPFKK KGKVHECSIC HRVFTSGQAL GGHKRCHWLT SSATDPAAAC TVAKLQSTVV 480 PDHLMAAMCH HLTLGRPMFD VAADQRILDL NVPTNPSSTA VDQAAAAIAA RQAAELNDIP 540 LCLNAPASMY VQSWTGHSNA SHVNKTGTSS RNDAAGGGGA ATEDEADSTS AKRAKIGDLK 600 DMKVAGESLP WLQVGIGISS SECKDKTAQD QE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g50780.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572779.1 | 0.0 | uncharacterized protein LOC100837092 | ||||
TrEMBL | I1ICA4 | 0.0 | I1ICA4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G50780.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 | Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 3e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g50780.1.p |
Entrez Gene | 100837092 |