PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g50220.1.p | ||||||||
Common Name | BRADI_3g50220, LOC100836770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25644.4 Da PI: 4.5266 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 33 | 86 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F++ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Bradi3g50220.1.p 33 KRRFTDEQVRSLESTFHSrRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 86 458**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 8.1e-39 | 32 | 124 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++ L+++yd l+++ e+L++e+ +L+++l+e Bradi3g50220.1.p 32 RKRRFTDEQVRSLESTFHSRRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFADLRAHYDDLHARVESLKQEKLTLAAQLEE 124 8*****************9999*******************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-17 | 20 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.313 | 27 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-17 | 29 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.06E-16 | 32 | 89 | No hit | No description |
Pfam | PF00046 | 3.9E-16 | 33 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-19 | 34 | 93 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.2E-7 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.2E-7 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.5E-13 | 88 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MESDCQFLLA PPMYGDGQFL QQQLMGGSGE IRKRRFTDEQ VRSLESTFHS RRAKLEPREK 60 AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDFADLRAH YDDLHARVES LKQEKLTLAA 120 QLEELKEKLS ERQDQSGSSD DGAEHEVDHD KDVRDNKVSC VVEEEEAEGA APVVDVVSDE 180 SAVGWYEYER LAYGGGAAAA LPEPFCATPE LWETTWPLVE WNAVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g50220.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367456 | 1e-124 | AK367456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057H16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569986.1 | 1e-165 | homeobox-leucine zipper protein HOX24 | ||||
Swissprot | A2X7U1 | 4e-83 | HOX24_ORYSI; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | I1IC31 | 1e-164 | I1IC31_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G50220.1 | 1e-164 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 | Representative plant | OGRP14598 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 8e-32 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g50220.1.p |
Entrez Gene | 100836770 |