PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g46200.1.p
Common NameBRADI_3g46200, LOC100834217
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 454aa    MW: 48385.4 Da    PI: 5.7618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g46200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.9e-14267312555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR++i +++ +L+el+P++      K +Ka++Le+ +eYIk Lq
  Bradi3g46200.1.p 267 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLEEIIEYIKFLQ 312
                       99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.89E-14260316No hitNo description
SuperFamilySSF474592.09E-17260322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.733262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17264321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-11267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-14268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MGGFVDPFIP SPAWPQDMVF PGSSWAGSSA QGMGFHHLQN GSSPTQLITD KELAAATVFP  60
AGNNAKLHDH EQQLLLRSTD DLDYTLCSIL GGQNVSLTDS APVLCSSSNE SSGSEQSGAA  120
GVLPQFLMGE RHPVPVAWAS GYAGEETPQS FGFPGDDLLH EAAPNGYQQL GTVAPAQLQL  180
HDDAKFSAGK LLSFAPGQQQ IRPDIDTLQQ EFGSGLRHLN LVPGAQLAPF NPKQCAEDGR  240
NGNGVAVGGG APKARVRARR GQATDPHSIA ERLRREKISD RMKNLQELVP NSNKTDKASM  300
LEEIIEYIKF LQLQTKVLSM SRLGATDALV PLLMDSHNES SGLVMGSPKS GAAAGGKGHA  360
GHRQTDSDDF VEDKVVLEQE VAQMMEDNMT MAMQYLQNRG LCLMPITLAS AISVQKGTFS  420
ATVRPENGGK DDVKRVPTVL PSQKEVKSRP NVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253261ARVRARRGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g46200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318299.10.0uncharacterized protein LOC100834217
TrEMBLA0A0Q3M6210.0A0A0Q3M621_BRADI; Uncharacterized protein
STRINGBRADI3G46200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-46LJRHL1-like 3