PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g45365.1.p
Common NameBRADI_3g45365
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 277aa    MW: 29026.3 Da    PI: 10.3033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g45365.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-1357107155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rr++h   Er RR+r+ + f++L  llP++   p  K++K++i+ +A+++Ik L+
  Bradi3g45365.1.p  57 RRAKHITTERERRKRMSEMFSTLHGLLPSL---P-DKMDKSSIVMEAIHHIKTLE 107
                       89***************************6...3.9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-1753121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.84356106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1057107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1557122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.96E-1160107No hitNo description
SMARTSM003532.9E-762112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSSGSNLIRA GAVNKGKGIV KEEEQAEEGT GGSKGDKLMS AAQAAAGRAG GSRRRGRRAK  60
HITTERERRK RMSEMFSTLH GLLPSLPDKM DKSSIVMEAI HHIKTLEGTV KELEKRKQDL  120
ARGMPAGIGS SVSGISSSSP AVVLPVPAAV VVQPPAAGAG AGAVPPQLGL QTWSGQNVAL  180
SLSGDDAYIN VCAPRYGPRM LKLVVSVLDK HGLEVITSGI ASESSRVMFN FHTRVNAANS  240
VFGDRLSSED LCKLAVSEIM IWLSSAKYCL HGTSAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15270RRRGRRAKHITTERERRKR
25271RRRGRRAKHITTERERRKRM
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g45365.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572599.15e-83transcription factor bHLH95
RefseqXP_010235515.15e-83transcription factor bHLH95
RefseqXP_010235516.15e-83transcription factor bHLH95
RefseqXP_010235517.15e-83transcription factor bHLH95
TrEMBLA0A0Q3FKM50.0A0A0Q3FKM5_BRADI; Uncharacterized protein
STRINGBRADI3G45360.18e-71(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-17bHLH family protein