PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g43250.3.p
Common NameBRADI_3g43250
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 211aa    MW: 22852 Da    PI: 6.7844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g43250.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-1353105155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ +hn+ Er RR+++N+ +  Lr+llP a   + kKls  +++ ++ +YI +Lq
  Bradi3g43250.3.p  53 KKLSHNAYERDRRKQLNELYLSLRSLLPDA--DHTKKLSIPTTVCRVLKYIPELQ 105
                       6789*************************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1650122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.45952104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.98E-1052109No hitNo description
PfamPF000102.1E-1053105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1253119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-858110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGHQLPPLTP WTNLDLDLDL DLDLDIDEGT AVAVRDATAA NGTSSGSGSG SHKKLSHNAY  60
ERDRRKQLNE LYLSLRSLLP DADHTKKLSI PTTVCRVLKY IPELQKKVED LEKRKEELTS  120
ANCKPGVILS GGIALAPTVS ATCLNDKEIM VQVSLLSTTD AATTTTLPLS KCISVLENEG  180
LRLISSSTFS TFGDKTQAHI PLQARYKHLT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g43250.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317688.11e-117protein IRON-RELATED TRANSCRIPTION FACTOR 2 isoform X6
SwissprotA2WZ604e-68IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A2K2D2W11e-151A0A2K2D2W1_BRADI; Uncharacterized protein
STRINGBRADI3G43250.11e-116(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.17e-19bHLH family protein