PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g41930.1.p
Common NameBRADI_3g41930, LOC100824611
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 294aa    MW: 31446.7 Da    PI: 7.4665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g41930.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-12116161454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er RR+r+N +f  Lr  +P+       +++ a+ L  Av YI++L
  Bradi3g41930.1.p 116 SHVEAERHRRERLNRRFCDLRAAVPTV-----SRMDRASLLSDAVSYISQL 161
                       89************************6.....49****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-15110179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.154112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-10115161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-11118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDALVVFPAA GSSSCSPPSA ASFFSAAERL PVRGSTPPVI ELVSCEVPEQ WLFNDDLDLD  60
DNYNYQPAWA GSAAAAAGGL PAMAMTTEPC APAVEMTKRS RRGRKPGPRS DAPTVSHVEA  120
ERHRRERLNR RFCDLRAAVP TVSRMDRASL LSDAVSYISQ LTARLARLER EAAAMARQKA  180
QAAESARQKA PAVREEEEEE RLEVRMVGAE REAAALRFVT ASSMASAVPA RLMAALRALD  240
LPVQHACVSR VHGGGAPTVV QDVVVDVPDA GMRDEGRLRT ALLRRLHAAA GDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14115178770Transcription factor MYC2
5gnj_B1e-14115178770Transcription factor MYC2
5gnj_E1e-14115178770Transcription factor MYC2
5gnj_F1e-14115178770Transcription factor MYC2
5gnj_G1e-14115178770Transcription factor MYC2
5gnj_I1e-14115178770Transcription factor MYC2
5gnj_M1e-14115178770Transcription factor MYC2
5gnj_N1e-14115178770Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g41930.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572475.10.0transcription factor bHLH14
TrEMBLI1I9610.0I1I961_BRADI; Uncharacterized protein
STRINGBRADI3G41930.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1106048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-08bHLH family protein