PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g38840.1.p | ||||||||
Common Name | BRADI_3g38840, LOC100843982 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 221aa MW: 23933.5 Da PI: 8.2429 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.2 | 3.2e-12 | 104 | 157 | 3 | 56 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 e +r rr+ +NRe+ArrsR RK+ ++ eL +v+ L + N++L +el++ + Bradi3g38840.1.p 104 EERRRRRMVSNRESARRSRMRKQRQLSELWARVAHLRSANRRLLDELNRALRAC 157 66899******************************************9866555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.4E-10 | 102 | 166 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.542 | 104 | 152 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.2E-9 | 104 | 152 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.8E-9 | 106 | 153 | No hit | No description |
SuperFamily | SSF57959 | 7.22E-10 | 106 | 154 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 109 | 124 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.15E-15 | 111 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MYHHNHGEVA SLHFLLPPNP SSSFTTHHHM NMALPPQAYF PPSFEPPALL TGDDTAAAFE 60 FETILEEAAH LVSGNGSPSS GSDGGGGNCY YQEGSAGAGA AAAEERRRRR MVSNRESARR 120 SRMRKQRQLS ELWARVAHLR SANRRLLDEL NRALRACADA CRESARLRDE KTKLTEKLEQ 180 LLKQPAPEKT ASSSAASSNR SSCSSEPCKN SATAADGVTE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 125 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g38840.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572318.1 | 1e-161 | bZIP transcription factor 11 | ||||
TrEMBL | I1I832 | 1e-159 | I1I832_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G38840.1 | 1e-160 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 | Representative plant | OGRP13025 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13600.1 | 1e-08 | basic leucine-zipper 58 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g38840.1.p |
Entrez Gene | 100843982 |