PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g38360.1.p | ||||||||
Common Name | BRADI_3g38360, LOC100836972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 25642.6 Da PI: 9.0773 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.4e-13 | 24 | 70 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+ +P+a +++Ka+ L ++v+++++L Bradi3g38360.1.p 24 RSHSEAERKRRQRINGHLATLRTFVPSA-----SRMDKAALLGEVVRHVREL 70 58*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.262 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-10 | 24 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.80E-11 | 24 | 71 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 24 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-13 | 24 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-11 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MATDGECSAR RPASSSRKAG PAVRSHSEAE RKRRQRINGH LATLRTFVPS ASRMDKAALL 60 GEVVRHVREL RGKASDATAG ADVVFPGEAD EVGVEEEEEE DDHGQHHQQR RRRGGRVVRA 120 WVCCADRPGL MSDLGRAVRS ASASARPVRA EIATVGGRTR GVLELDCDAD GIGNASDRAV 180 ALSALRAALR TVLLNRDELL LAAAAAREDE GHKRPRRLSP PQTPPSWSSA DLQSSDLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 34 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g38360.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727968 | 2e-55 | KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572297.1 | 1e-166 | transcription factor AIG1 | ||||
TrEMBL | I1I7W8 | 1e-165 | I1I7W8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G38360.1 | 1e-166 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 3e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g38360.1.p |
Entrez Gene | 100836972 |