PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g17790.2.p

Common Name

BRADI_3g17790, LOC100825213

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YC

Protein Properties

Length: 224aa MW: 24832.8 Da PI: 4.0673

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g17790.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	148.7	1.2e-46	56	156	1	98
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw+++ ie+ td k h+lPlarikki+kadedv+mi+ eaP++++kace+fileltlrswl+++en+r+tl+k+dia++v+r d fd Bradi3g17790.2.p 56 QLQTFWADRkteIEQITDCKTHSLPLARIKKIMKADEDVQMIAGEAPAVFAKACEMFILELTLRSWLQTRENNRNTLQKNDIATVVSRNDDFD 148 89**977677***************************************************************************** PP NF-YC 91 flvdivpr 98 flvd++ + Bradi3g17790.2.p 149 FLVDVMQE 156 **9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.44E-26	51	150	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.9E-32	73	141	IPR009072	Histone-fold
Pfam	PF00808	2.2E-18	78	141	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDQHSQTKVE DVVMVSGAPS AGTAFPAGSN GGPVVYAAAP LQQQLPLQQK QEVQQQLQTF 60 WADRKTEIEQ ITDCKTHSLP LARIKKIMKA DEDVQMIAGE APAVFAKACE MFILELTLRS 120 WLQTRENNRN TLQKNDIATV VSRNDDFDFL VDVMQENGAV LPPVTLQTMV PGMGIPFGMY 180 GNQLPTAFAW PQPEQQPPYN GEQQQEEEEE EEEEPPYNGG QDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-43	67	154	6	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g17790.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571523.1	1e-165	nuclear transcription factor Y subunit C-4
Refseq	XP_014756175.1	1e-165	nuclear transcription factor Y subunit C-4
Swissprot	Q655V5	3e-50	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	I1I1W3	1e-163	I1I1W3_BRADI; Uncharacterized protein
STRING	BRADI3G17790.1	1e-164	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20936	2	7
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-47	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Bradi3g17790.2.p
Entrez Gene	100825213

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]