PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10414.1.p
Common NameBRADI_3g10414
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 366aa    MW: 41129.7 Da    PI: 4.3571
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10414.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.42.9e-19361651128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk..dke 91 
                       l pGf+F+P+dee+v  +L ++++g++l+le ++ ++d  ++ PwdL     a++++ +fF++ d+++++ k+++  +  g+W  +    ++e
  Bradi3g10414.1.p  36 LSPGFKFEPEDEEIVELFLLPRLHGDPLPLEGIFLDADPRSAPPWDLF----ARNTSGFFFAPGDEANQR-KKPRTCVGGGTWVGQKLekKEE 123
                       579***************************999**************6....356788*****9998754.455558899***8665500555 PP

               NAM  92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  +      ++ + + k    f++g+ ++g +t Wvm ey++
  Bradi3g10414.1.p 124 LRLRlsggedETVVCWQKYRYNFHRGSGRTG-STGWVMLEYTI 165
                       55558887655555889999*****999997.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-2630182IPR003441NAC domain
PROSITE profilePS5100526.00636182IPR003441NAC domain
PfamPF023651.7E-1438165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGDERRWACM SDAVAGQERP RPSYRPWRRP AGILGLSPGF KFEPEDEEIV ELFLLPRLHG  60
DPLPLEGIFL DADPRSAPPW DLFARNTSGF FFAPGDEANQ RKKPRTCVGG GTWVGQKLEK  120
KEELRLRLSG GEDETVVCWQ KYRYNFHRGS GRTGSTGWVM LEYTIAEPSD YNSFKVCRIT  180
FTGHGQKRKR VPDSDDQLAT SAPSSIATGY QDHSAGAARA CDQEPFLTQQ ETDSWTDQQE  240
PAFPMQQQLV DQEQQAMGHA STTLPFGQES GMLVHMDQES GILEQFVSEQ FTMPLQMDQE  300
TSFPVNFAGY GTAPLPVYQE SSMWGQFVEY GPTPLTPDQQ FISMPEQSID FEDPATQVIL  360
EWFAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10414.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3F8610.0A0A0Q3F861_BRADI; Uncharacterized protein
STRINGBRADI3G10540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP1446524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.28e-12NAC domain containing protein 47