PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g05530.1.p
Common NameBRADI_3g05530, LOC100825826
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 368aa    MW: 38365.7 Da    PI: 3.9763
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g05530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix31.35.2e-1081160171
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkr 71 
                       +Wt  e+laL++a+  +++   r+ ++ ++W+ v++++         ++r   r +  Ck +we l+ +y +++++e + 
  Bradi3g05530.1.p  81 EWTAAETLALVAAVAATDDGWARSVSAFQKWAIVAENLassegaggsSSRRRARPAGDCKRRWEALAAEYAAVRQWEART 160
                       5********************************************998999999***********************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-680161No hitNo description
PROSITE profilePS500906.482147IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDPNDAGLPC IVQALASIDP SDTTVLPCIV QALAALPPSP PTPKTPAPAT PRAQPPPPPA  60
TESSNSMPPS PRRTRSGRAP EWTAAETLAL VAAVAATDDG WARSVSAFQK WAIVAENLAS  120
SEGAGGSSSR RRARPAGDCK RRWEALAAEY AAVRQWEART GGRYSEMGAA ARRKAGLPSE  180
FDTEVYGIMD ALLADSGDAG GGGGKEGLVG AGGGGGADVG EEEGDGVGVG EEEEDDDDDD  240
EKEEELEGDD NEGEMQVDGG NANASDDLEY CETETQNEPK KSQIEAWELA NKLNDNAQHI  300
HMILEGEVGD DAGQNHAPAD PISPNAMEST RQKADELIKS LGGLVSYLNQ FTDLIKDNGF  360
EDVVGVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g05530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570993.10.0sodium/potassium/calcium exchanger 1
TrEMBLI1HXS90.0I1HXS9_BRADI; Uncharacterized protein
STRINGBRADI3G05530.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Representative plantOGRP74821314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-11sequence-specific DNA binding transcription factors