PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g01901.3.p

Common Name

BRADI_3g01901, LOC100843665

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 570aa MW: 60644.1 Da PI: 4.399

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g01901.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	287	330	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++Er+RR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Bradi3g01901.3.p 287 MAERNRRKKLNDRLYKLRSLVPNI-----TKMDRAAILGDAIDYIVGLQ 330 79*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.02E-17	280	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.48E-13	280	334	No hit	No description
PROSITE profile	PS50888	15.497	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-16	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-10	287	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-16	287	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MGVEHQQHHS IVGSSAAAAV NGHGGGGGGG GGGATVEAVL RPLVGADSWD YCIYWRLSPD 60 QSFLEMTGFC CSGEFEAQVA ALGDLPSSIP LDSSIGIHSQ ALLSNQPIWQ SYSSDVAQTH 120 DTAGGNGGGE KTRLLVPVAG GLVELFASRY MAEEQEMAEM VMVQCGGGHG WQLQQPATAA 180 EDQFYAATSV ASLNLFDSGG GEDQFLAPAA EAGEDGGAAS WGFAAGNSEP SAAVHEQLYS 240 GGVAARAESG SEGSELQGDD DVDGEVQRGG KDGGTGGGKR QQCKNLMAER NRRKKLNDRL 300 YKLRSLVPNI TKMDRAAILG DAIDYIVGLQ KQVKELQDEL EEEENPNPNN GIMAPDVLTM 360 DDHPPPGLDN DDVSPPPPQP PLCKKRARAA AAAAAGEDQE EKDDDKGGDQ DQDMEPQVEV 420 RQVDGSDEFF LQVLCSHKSG RFVRIMDEIA ALGLQVTNVN VTSYNKLVLN VFRAVMRENE 480 AAVPVDRVRD SLLEATREMY GAGGCVWPVA AMAPPPLTTR ETPTTTMMMA EVAKLYGGQA 540 GEHHYHLQQQ QHQELGGYHQ HHLHYLGLD*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MGVEHQQHHS IVGSSAAAAV NGHGGGGGGG GGGATVEAVL RPLVGADSWD YCIYWRLSPD  60
QSFLEMTGFC CSGEFEAQVA ALGDLPSSIP LDSSIGIHSQ ALLSNQPIWQ SYSSDVAQTH  120
DTAGGNGGGE KTRLLVPVAG GLVELFASRY MAEEQEMAEM VMVQCGGGHG WQLQQPATAA  180
EDQFYAATSV ASLNLFDSGG GEDQFLAPAA EAGEDGGAAS WGFAAGNSEP SAAVHEQLYS  240
GGVAARAESG SEGSELQGDD DVDGEVQRGG KDGGTGGGKR QQCKNLMAER NRRKKLNDRL  300
YKLRSLVPNI TKMDRAAILG DAIDYIVGLQ KQVKELQDEL EEEENPNPNN GIMAPDVLTM  360
DDHPPPGLDN DDVSPPPPQP PLCKKRARAA AAAAAGEDQE EKDDDKGGDQ DQDMEPQVEV  420
RQVDGSDEFF LQVLCSHKSG RFVRIMDEIA ALGLQVTNVN VTSYNKLVLN VFRAVMRENE  480
AAVPVDRVRD SLLEATREMY GAGGCVWPVA AMAPPPLTTR ETPTTTMMMA EVAKLYGGQA  540
GEHHYHLQQQ QHQELGGYHQ HHLHYLGLD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	292	RQQCKNLMAERNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g01901.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375074	1e-99	AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233727.1	0.0	transcription factor TDR
Refseq	XP_010233729.1	0.0	transcription factor TDR
Refseq	XP_024317908.1	0.0	transcription factor TDR
Swissprot	Q6YUS3	1e-156	TDR_ORYSJ; Transcription factor TDR
TrEMBL	I1HWI2	0.0	I1HWI2_BRADI; Uncharacterized protein
STRING	BRADI3G01901.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5530	34	49
Representative plant	OGRP3704	13	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi3g01901.3.p
Entrez Gene	100843665

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]