PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g60340.1.p | ||||||||
Common Name | BRADI_2g60340, LOC100838171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 25109.7 Da PI: 4.6609 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.1 | 5.8e-15 | 46 | 96 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 + y+GVr + grWv+e+r+p g + kr +lg++ tae A +a++aa+++l Bradi2g60340.1.p 46 PVYRGVRHRGAAGRWVCEVRVP---GaHGKRLWLGTHLTAESAGRAHDAAMLAL 96 68*******************9...7666**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-9 | 46 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-13 | 47 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-22 | 47 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.795 | 47 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-11 | 47 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.33E-17 | 48 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAMDGFDERI CSSPSSSPSS SSSQEGLAVW SKRPAGRTKF KETRHPVYRG VRHRGAAGRW 60 VCEVRVPGAH GKRLWLGTHL TAESAGRAHD AAMLALLPSA AACLLNFPDS AAATPPALGC 120 AAVVAVAGFL SREAAPSIVS VVIPVAVVPV AVVPVDNGAA GAWPSFLGVL FEVPLPVPPM 180 AMGSGMLELE LELDMPSEMD LGMHYADLAE GLLMEPPQDT NEASCWESGD FGDGGDLWSY 240 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g60340.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ180470 | 4e-57 | JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232793.1 | 1e-172 | dehydration-responsive element-binding protein 1H | ||||
TrEMBL | I1HV25 | 1e-171 | I1HV25_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G60340.1 | 1e-172 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP6456 | 5 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-20 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g60340.1.p |
Entrez Gene | 100838171 |