PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g58630.2.p
Common NameBRADI_2g58630, LOC100838672
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 476aa    MW: 50224.3 Da    PI: 6.2627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g58630.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09280327455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Bradi2g58630.2.p 280 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 327
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.19E-10274331No hitNo description
SuperFamilySSF474591.31E-16274345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16278344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6280327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10282332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNCGPPDQLP PPQATAPSCF LNLNWDQSMD APAHRGAGAH LDPALGSMVS SPAASNSTAT  60
EGLALHGISP HYGGTPPPKL DLSMMGQFHH HYPPPQAGGG SGGGLPTLEN LMPMGSLDQF  120
LADPGFAERA ARLSGFGGPG PGQFGLPDDG PIGALKELEL GNARDESSVS DPASEMALKG  180
APDGNARKRK AGSKGKGKDS SMSTSAKDLL AKEDSAAKRC KSMEESNGAE ENCAKGKAAQ  240
SSSENGGGKK QGKDAGASKL PEPPKDYIHV RARRGEATDS HSLAERVRRE KISQRMKLLQ  300
DLVPGCNKVV GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPQLDFNNLP NLLAKDMQQS  360
CGQLQSSHFP LEASGAPLPY MSQPHQGSNP LDCGMTDGMD DQGSMHHQLD PAFCRPMGSH  420
HHFLNGVSDA ASQVGAFWQD LQSVVQMDMG QSQEIATSSN SYDGSLQTVH MKMEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g58630.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564914.10.0transcription factor bHLH77 isoform X2
TrEMBLI1HUJ30.0I1HUJ3_BRADI; Uncharacterized protein
STRINGBRADI2G58630.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-55bHLH family protein