PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g56320.1.p
Common NameBRADI_2g56320, LOC100830806
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 526aa    MW: 57049.1 Da    PI: 6.3876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g56320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06283304223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C +Cgk F+r  nL+ H+r H
  Bradi2g56320.1.p 283 FCVICGKGFKRDANLRMHMRGH 304
                       6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-5280307No hitNo description
PROSITE profilePS5015711.614282309IPR007087Zinc finger, C2H2
SMARTSM003550.015282304IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-5283308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280284304IPR007087Zinc finger, C2H2
SMARTSM0035572331364IPR015880Zinc finger, C2H2-like
SMARTSM0035522369391IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MESGMRRSSE TSVKALSSMA SEASRNTDPG QQGLRFNSTD QSYFARAGQS IPVFPPFFGP  60
QSSSFCLPDG SGAKVGGQFE PNPSLNNPIS DWDPQAMLSN LSFLEQKIKQ VKDVVQSMSN  120
RGSQVVGGSG ELAAKQQLVT ADLTCIIIQL ISTAGSMLPS MKSPLLSSNP AVRQLSNTLG  180
SPMGFGSIAN QRPSINKEQT IPDITKTSDY EELMNTINTT HDGKDDLIKC PNPCVGEGSD  240
PIPFEDHDVK ESDDGGEGEN LPPGSYVVLQ LEKEEILAPH THFCVICGKG FKRDANLRMH  300
MRGHGDEYKT PAALAKPMKD SSSDHTPVTR YSCPFVGCKR NKEHRKFQPL KTILCVKNHY  360
KRSHCDKSYT CSRCNTKKFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG  420
HTPALPMDDI KGTCVSDQPE GSEVMDDMVG STGYNFPGSA SDGIPNLDMK VADDVRGYFS  480
PLSFDPCFGA LDDFTRPGFD ISENPFSFLP SGPGSCSFGQ PSGDS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g56320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564719.10.0zinc finger protein STOP1 homolog
RefseqXP_024315785.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLI1HTT70.0I1HTT7_BRADI; Uncharacterized protein
STRINGBRADI2G56320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-150C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]