PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g51990.1.p | ||||||||
Common Name | BRADI_2g51990, LOC100822020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 393aa MW: 41697.2 Da PI: 6.7359 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.2 | 0.00034 | 282 | 319 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A eYIk L Bradi2g51990.1.p 282 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 319 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.874 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.68E-4 | 280 | 324 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-10 | 280 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.3E-8 | 280 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MADEWWSSST SQRSHGTSAC TAAPLMDTGH AAACGWTSPA AESTSSITFQ DPHRSSCATT 60 HQPSSDAASS LGDPHMDWTH AFLSGRSDAS FQAVLQDAMG PASTTSSRPL FRAHQSAADD 120 TVMNNNPFRN MSHGFSLLDQ APPAAAASSS PYGTAPALQQ GMFDAAAEAS NTSMFGECQS 180 TASYDAQAIQ LSTQMQGGGA QQLQYLSGGG GGYMPFGGGP LSSQLLLQAL QPKTSYSPNT 240 LMAKSAERAS SPAARKNEPD SPAAAKRPRI EAPSPLPTFK VRKEKLGDRI TALQQLVSPF 300 GKTDTASVLH EANEYIKFLH DQVASLTYPY LKNVNQMQQF QQKGSENAKE AGEPKKDLRS 360 RGLCLVPVAT TYTVASETMP EFWHPTFGGT FR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g51990.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 5e-76 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567189.1 | 0.0 | transcription factor bHLH123 | ||||
TrEMBL | A0A0Q3N0Q4 | 0.0 | A0A0Q3N0Q4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G51990.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 | Representative plant | OGRP3135 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 2e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g51990.1.p |
Entrez Gene | 100822020 |