PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g43600.2.p | ||||||||
Common Name | BRADI_2g43600, LOC100828596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 480aa MW: 52493.3 Da PI: 7.9785 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.3e-08 | 103 | 128 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++rt tC yG+ CkF H++ Bradi2g43600.2.p 103 GEKDCAFYMRTRTCMYGEGCKFDHPQ 128 7889********************97 PP | |||||||
2 | zf-CCCH | 28.4 | 2.7e-09 | 152 | 178 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+ff++t C + ++CkF+H++ Bradi2g43600.2.p 152 PGEPDCPFFMKTRRCGFASKCKFNHPK 178 5789*********************96 PP | |||||||
3 | zf-CCCH | 23.5 | 9.7e-08 | 207 | 227 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e+C+ff + G Ck+G +CkF+H Bradi2g43600.2.p 207 EPCPFFPK-GKCKFGTNCKFSH 227 89******.************* PP | |||||||
4 | zf-CCCH | 32.6 | 1.4e-10 | 280 | 306 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+ +tG C yG++C+F+H++ Bradi2g43600.2.p 280 PGEVDCSFYIKTGSCMYGSTCRFNHPE 306 57899********************96 PP | |||||||
5 | zf-CCCH | 37 | 5.7e-12 | 367 | 391 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG+Ck+ ++CkF+H+ Bradi2g43600.2.p 367 GETVCDFYMKTGFCKFSEKCKFHHP 391 6789********************9 PP | |||||||
6 | zf-CCCH | 42.6 | 9.7e-14 | 424 | 447 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C+f+++tGtCk+G +CkF H+p Bradi2g43600.2.p 424 EVCSFYMKTGTCKFGVQCKFDHPP 447 78********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.446 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-6 | 103 | 128 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0083 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-6 | 153 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-5 | 156 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 204 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.873 | 204 | 230 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-5 | 205 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 207 | 229 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-5 | 207 | 227 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.192 | 279 | 307 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-5 | 279 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-7 | 281 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-6 | 283 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 285 | 306 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-7 | 365 | 393 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.371 | 365 | 393 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-7 | 365 | 392 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 367 | 391 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 370 | 391 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.403 | 420 | 448 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-7 | 420 | 447 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 422 | 449 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-6 | 424 | 447 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-11 | 424 | 447 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MSDFPFYPYG GGGAGDDPAA RYSSYEVDLI AARYAGDRFP YPSASGAFDA HVGARRPSEV 60 LYHQYIMGSH STMGQSEALY SSNSMAKRPR VESSLPIYPQ RPGEKDCAFY MRTRTCMYGE 120 GCKFDHPQWV PEGGIPNWKE APKDEESYPE RPGEPDCPFF MKTRRCGFAS KCKFNHPKEK 180 VNVTVAGTGN KGSQISESSI SPVKPSEPCP FFPKGKCKFG TNCKFSHAKD IEVPSSGHES 240 KSTATVEAAG HNIAASDSVS AKKLTPVAQE HNSKGMPIRP GEVDCSFYIK TGSCMYGSTC 300 RFNHPERHHP VLDFPLVAPL GQSILPTSSV VPVEMLNRAT NFLPNFDFHA THVPIEPEPI 360 AYPQRPGETV CDFYMKTGFC KFSEKCKFHH PVDRSASAPV ASTEPRQKSV TLTLAGLPRR 420 EDAEVCSFYM KTGTCKFGVQ CKFDHPPPEE AIAKVSKQGA AEEKGGKKEA AGLSYVLGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g43600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569363.1 | 0.0 | zinc finger CCCH domain-containing protein 8 isoform X1 | ||||
Swissprot | Q5ZDJ6 | 0.0 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A0Q3ISB4 | 0.0 | A0A0Q3ISB4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G43600.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 | Representative plant | OGRP6754 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-139 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g43600.2.p |
Entrez Gene | 100828596 |
Publications ? help Back to Top | |||
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