PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g41390.1.p
Common NameBRADI_2g41390, LOC100831535
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 456aa    MW: 47675.3 Da    PI: 6.3728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g41390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.5e-07347387954
                       HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        r+RR+ri +++  L++l+P  a      K++ a++L +A  Y++ L
  Bradi2g41390.1.p 347 ARQRRERISERLRVLQRLVPGgA------KMDTASMLDEAASYLRFL 387
                       69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-13344398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-11344392No hitNo description
Gene3DG3DSA:4.10.280.101.9E-10346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-4347387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEHGFCNDMI LSESAWNSGD GGAGGGAAGD LVDVVDGGSG MTVLERLVLD EALAAAILEL  60
QGIQVPCKAA HSLPAMMAGG VVEAFGGMPA AAAYGDADGV VVQRVQQHRH QGAMGMPAAA  120
DYDLVPAPAA VRAVTLAATA PSFANANITS TTAFDRVDAD VFSGNDAAPK RALAKAGAAT  180
TTPRSQWAEE EAGNGSSTAA KRQRRSSRKR KATAEPPPCT DELENPLCSL LASTSAARAN  240
ANGGIQIAFS SSSSTNACKR TKPSPVTICS SASSSISFDG RVANNEQQQQ YEPDTEALAQ  300
VKEMIYRAAA MRPVTLGCNG GDEDTERAPA PGRRNVRISS DPQTVAARQR RERISERLRV  360
LQRLVPGGAK MDTASMLDEA ASYLRFLKAQ IRDLQTLDRR NYPADHLNNC TAAPLMGYNN  420
GMPNFAFTPA AAETRTLGGG GRGEDQPPFM CGQFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g41390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031416e-79AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032966e-79AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149576e-79AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126096e-79CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566789.10.0transcription factor APG
TrEMBLI1HNP80.0I1HNP8_BRADI; Uncharacterized protein
STRINGBRADI2G41390.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP1289345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-32bHLH family protein