PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g36778.1.p | ||||||||
Common Name | BRADI_2g36778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 257aa MW: 28455.4 Da PI: 4.5583 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.9 | 4.1e-11 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 ien+ +r++t+ +R++ ++ K +ELS+LC + ++++++ Bradi2g36778.1.p 10 YIENNARRKTTLKRRLKCLISKVNELSILCHVVALLVVY 48 59*******************************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.759 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-15 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-8 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.21E-15 | 2 | 83 | No hit | No description |
PRINTS | PR00404 | 3.6E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-10 | 11 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MARGKVKLQY IENNARRKTT LKRRLKCLIS KVNELSILCH VVALLVVYRN ADVQQPEVVW 60 PSMEQAVAVA EEYMAVNTEK LKKDLDGLGL TQELVAKERA KVQNLQQTIQ TKQIIHNLFI 120 RRQTLNAQGL TLTPEVDHEL RSLNLQVTTD IQCQLQSTLR AVNDQLKEKR SGSTSAPPAA 180 ELEAPVAPDD VPAVAPMEMD PSHAADAPMA AGLGGFFIDE EDDFTFDEED DFDIDGDGSD 240 LLTPEQLRDI LARIGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g36778.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010233355.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0Q3MTE8 | 0.0 | A0A0Q3MTE8_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 3e-08 | AGAMOUS-like 48 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g36778.1.p |