PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g23890.4.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 553aa MW: 61643.6 Da PI: 6.6308

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g23890.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.5	2.2e-11	244	272	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Bradi2g23890.4.p 244 KTERRLAQNREAARKSRLRKKAYVQQLET 272 88*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-7	239	286	No hit	No description
SMART	SM00338	2.6E-4	240	299	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	242	286	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-8	244	272	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-7	244	285	No hit	No description
PROSITE pattern	PS00036	0	247	262	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-27	325	399	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MFKRTQYLLR GTVVDETPRA IRFDSVGEDR QERRQRPIIC RVLLLIVMVQ GEESSWSMAS 60 DRDRAVPFGQ ALAYGIQGHA PAAPPANFLE LQPAAAAYFG ELGEALIHGT CAGVNPVMIE 120 GDAHTKSAYL AARPPTLEIF PSWPMSHLQQ PYSANSQSVG STDSSSAQNT MSQAELVSPV 180 SMRTDCGQQQ EVLMVTIDDY NYNQGLGPAA AATVTAPSFQ QHAGGQDKRK HGSTRKDDKL 240 LDPKTERRLA QNREAARKSR LRKKAYVQQL ETGRIRLQQI EQELQRGRSQ GLLIGGCSAP 300 GDTSPGAVMF DMEYARWLDE DSKYMIELQS ALQAHILDGN LGTIVEECLR HYDELFHLRG 360 VLARSDVFHL MTGMWATQSE RCFLWMAGFR PSEILKMLTP QLDPLTEQQL LGMFNLQQSS 420 EQAEEALAQG LKQLHQSLAD AVGAGPLNDG ADVANYTSLM ALALDRLDNL ESFYREADNL 480 RRQTLHRMRQ ILTTRQTARC FLSIGEYHRR LRALSSIWAA RPRENFIMAE NVSSTGTEFQ 540 VHQSQQNQFS GL*

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MFKRTQYLLR GTVVDETPRA IRFDSVGEDR QERRQRPIIC RVLLLIVMVQ GEESSWSMAS  60
DRDRAVPFGQ ALAYGIQGHA PAAPPANFLE LQPAAAAYFG ELGEALIHGT CAGVNPVMIE  120
GDAHTKSAYL AARPPTLEIF PSWPMSHLQQ PYSANSQSVG STDSSSAQNT MSQAELVSPV  180
SMRTDCGQQQ EVLMVTIDDY NYNQGLGPAA AATVTAPSFQ QHAGGQDKRK HGSTRKDDKL  240
LDPKTERRLA QNREAARKSR LRKKAYVQQL ETGRIRLQQI EQELQRGRSQ GLLIGGCSAP  300
GDTSPGAVMF DMEYARWLDE DSKYMIELQS ALQAHILDGN LGTIVEECLR HYDELFHLRG  360
VLARSDVFHL MTGMWATQSE RCFLWMAGFR PSEILKMLTP QLDPLTEQQL LGMFNLQQSS  420
EQAEEALAQG LKQLHQSLAD AVGAGPLNDG ADVANYTSLM ALALDRLDNL ESFYREADNL  480
RRQTLHRMRQ ILTTRQTARC FLSIGEYHRR LRALSSIWAA RPRENFIMAE NVSSTGTEFQ  540
VHQSQQNQFS GL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g23890.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024315091.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A2K2DA63	0.0	A0A2K2DA63_BRADI; Uncharacterized protein
STRING	Traes_1DL_AFDF3B024.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66
Representative plant	OGRP10696	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-138	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi2g23890.4.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]