PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g22810.1.p | ||||||||
Common Name | BRADI_2g22810, LOC100829691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 446aa MW: 47705.1 Da PI: 4.9734 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.5e-13 | 195 | 246 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e+I++L+ Bradi2g22810.1.p 195 QRMTHIAVERNRRRQMNDYLRVLRSLMPGS---YVQRGDQASIIGGAIEFIRELE 246 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 193 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.89E-14 | 193 | 250 | No hit | No description |
PROSITE profile | PS50888 | 15.859 | 194 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.24E-16 | 194 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 195 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 200 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.811 | 371 | 445 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010377 | Biological Process | guard cell fate commitment | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MEKQSEQGSN NQQQQQLDSF APLDGAAPDQ DQIIGGGAGA EMVDYMLGQQ TPPPPPPPHG 60 HVSSFDKLSF SDVLHFADFG PRLALNQPLS THHPADSDND EDSYFFRFQP SLPAAEDSDD 120 PTAQHAAVTT QGSGGDHGTV GGGVSESTTT LVQPQQQQQE TVGGGKGGGG GGAGNKSGRR 180 KRPRSTKTSE EVESQRMTHI AVERNRRRQM NDYLRVLRSL MPGSYVQRGD QASIIGGAIE 240 FIRELEQLIQ CLESQKRRRL YGDAPRPTAP DISTGAGAPP VVPPPATSSM LQHEQQAAPP 300 QGPPHHDAPA PFYVVPAPSP GTSLPLIPVI SDDGVAKGID DLDGGLGREE VAENKSCLAD 360 IEVRVLGADA VVKVLSRRRP EQLIKTIAVL EEMHLSILHT NITTIDQTVL YSFNVKIAGE 420 PRFTAEDIAG AVHQILSFID INYTL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 171 | GGKGGGGGG |
2 | 195 | 206 | RMTHIAVERNRR |
3 | 255 | 259 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g22810.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252109 | 1e-105 | AK252109.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148l20, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231276.1 | 0.0 | transcription factor FAMA | ||||
TrEMBL | A0A0Q3G3G3 | 0.0 | A0A0Q3G3G3_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G22810.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9502 | 33 | 40 | Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24140.1 | 5e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g22810.1.p |
Entrez Gene | 100829691 |