PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g14320.1.p
Common NameBRADI_2g14320, LOC100839603
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 260aa    MW: 27727.9 Da    PI: 4.5533
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g14320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.69.1e-23169212245
               WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r  + ++e
  Bradi2g14320.1.p 169 LEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVPLVVE 212
                       59***********************************9988775 PP
2QLQ54.24.4e-19102137237
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       +FTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Bradi2g14320.1.p 102 SFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 137
                       8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-8101137IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.018102137IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-12102136IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.44168212IPR014977WRC domain
PfamPF088791.8E-19170208IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAAEGEAKDT NPPVGSVGGG GESTTLEEGV MHEAGGGQEP EEEDAGREEK YGDAGGECKD  60
LVLVEEDPVV LLEDPDEAAA TEALQEEMRA LVASVPEGAG ASFTAMQLQE LEQQSRVYQY  120
MAARVPVPTH LVFPIWKSVT GASSEGAQNY PTLMGLATLC LDFGKSPELE PGRCRRTDGK  180
KWRCWRKTIP NEKYCERHMH RGRKRPVPLV VEDDEPVSAS GSKSSSGKVA EGGKKTDEKS  240
SSSKKLAVAA PATVESLHD*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g14320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0991680.0FP099168.1 Phyllostachys edulis cDNA clone: bphylf034g02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567781.10.0growth-regulating factor 11
SwissprotA5HEG91e-125GRF10_MAIZE; GRF-interacting factor 10
TrEMBLI1HFR50.0I1HFR5_BRADI; Uncharacterized protein
STRINGBRADI2G14320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Representative plantOGRP1193646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-29growth-regulating factor 5
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]