PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g12030.2.p
Common NameBRADI_2g12030, LOC100835008
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 554aa    MW: 59292.5 Da    PI: 6.7615
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g12030.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.31.3e-20117235186
          trihelix   1 rWtkqevlaLiearremeerlrrgk................................lkkplWeevskkmrergferspkqCkekwenlnkry 61 
                       +Wt+ +v++Li ++ + +++ + +                                 +kk++W++vs+ m e+gf++sp+qC++k+++lnkry
  Bradi2g12030.2.p 117 KWTDAMVRLLIMVVYNAGDDGEGAVaaavggggggggsraaahghghgsataaahaqQKKGKWKSVSRTMGEHGFTVSPQQCEDKFNDLNKRY 209
                       699999999999888555544432223344445555555555555666666666666************************************ PP

          trihelix  62 kkikegekkr.tsessstcpyfdqle 86 
                       k++ +  +++ ++ ++++ +++d ++
  Bradi2g12030.2.p 210 KRVVDLLGRGkACAVVESPALLDAMD 235
                       ********996699999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.4E-17115260No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MERGDGAAAG GGGMGPRGAP AAMLGMGMQQ FVSQPHAAAP VFQQPEHLHG GVFGQHHHQP  60
VPAPARQQPP SYSPYPAVPV RAGGGHHEEE AMGHGAGNDG VAAQQQQQPG GLWSRMKWTD  120
AMVRLLIMVV YNAGDDGEGA VAAAVGGGGG GGGSRAAAHG HGHGSATAAA HAQQKKGKWK  180
SVSRTMGEHG FTVSPQQCED KFNDLNKRYK RVVDLLGRGK ACAVVESPAL LDAMDELPPR  240
AKEEARKLLS SKHLFFREMC NYHNSPHPHA AAAVTVASHH GAAVHDHEGA AACFHHPQPV  300
ACASSAAALH ALAPSPAMMN SSTRTEGDEE DDDSENAHPR TSNEVEEMDE EDVLDDEEEQ  360
APGIKSKHRR FHSLNSNGFP KRRRGESSTM EAEEDGNNND NTGAGEGEAP SSAGVQHLQS  420
ELAAAAGGGD PEQARRWMRR RALAVEEQLL ACDYREYKLH RQRLKWERFC AGKEREMELA  480
KLRNERARID GRRMLLMIQH KEMDLLRGSS TAGEACNNSS SVDHNPRQTP PFSAFQQQQQ  540
LGSSPSTAGG HHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g12030.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890282e-76AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBankAP0034142e-76AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039212e-76AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149572e-76AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-76CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753555.10.0uncharacterized protein LOC100835008
TrEMBLA0A0Q3IUP40.0A0A0Q3IUP4_BRADI; Uncharacterized protein
STRINGBRADI2G12030.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Representative plantOGRP1284445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.19e-43sequence-specific DNA binding transcription factors